SMTL ID : 1c3r.1

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG COMPLEXED WITH TRICHOSTATIN A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.168, H.170, D.258 Ligands: TSN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.168, A:H.170, A:D.258 ZN.3: 4 residues within 4Å: Chain B: D.168, H.170, D.258 Ligands: TSN.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.168, B:D.168, B:H.170, B:D.258

2 x TSN: TRICHOSTATIN A(Non-covalent)

TSN.2: 14 residues within 4Å: Chain A: N.20, P.22, H.131, H.132, G.140, F.141, D.168, H.170, D.258, L.265, Y.297 Chain B: E.195, F.200 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.22, A:F.141, A:F.141, A:F.141 Hydrogen bonds: A:H.132, A:Y.297 Water bridges: A:G.295, A:G.295 TSN.4: 15 residues within 4Å: Chain A: E.195, F.200 Chain B: N.20, P.22, H.131, H.132, G.140, F.141, D.168, H.170, F.198, D.258, L.265, Y.297 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.22, B:F.141, B:F.141, B:F.198 Hydrogen bonds: B:H.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finnin, M.S. et al., Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors. Nature (1999)

Release Date

1999-09-15

Peptides

HDLP (HISTONE DEACETYLASE-LIKE PROTEIN): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)

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