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SMTL ID : 1c4k.2
(1 other biounit)
ORNITHINE DECARBOXYLASE MUTANT (GLY121TYR)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.70 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
G.197
,
S.198
,
S.199
,
N.202
,
H.223
,
S.225
,
Q.288
,
D.316
,
A.318
,
S.352
,
H.354
,
K.355
Chain B:
S.394
,
T.395
,
S.396
14
PLIP interactions
:
11 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:Q.288
,
A:A.318
,
A:K.355
Hydrogen bonds:
A:S.198
,
A:S.199
,
A:S.352
,
A:S.352
,
B:T.395
,
B:T.395
,
B:S.396
Water bridges:
A:H.223
Salt bridges:
A:H.354
,
A:K.355
pi-Stacking:
A:H.223
PLP.3:
15 residues within 4Å:
Chain A:
S.394
,
T.395
,
S.396
Chain B:
G.197
,
S.198
,
S.199
,
N.202
,
H.223
,
S.225
,
Q.288
,
D.316
,
A.318
,
S.352
,
H.354
,
K.355
15
PLIP interactions
:
11 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:Q.288
,
B:A.318
,
B:K.355
Hydrogen bonds:
B:S.198
,
B:S.199
,
B:S.352
,
B:S.352
,
A:T.395
,
A:T.395
,
A:T.395
,
A:S.396
Water bridges:
B:H.223
Salt bridges:
B:H.354
,
B:K.355
pi-Stacking:
B:H.223
2 x
GTP
:
GUANOSINE-5'-TRIPHOSPHATE
(Non-covalent)
GTP.2:
13 residues within 4Å:
Chain A:
I.170
,
H.171
,
V.176
,
E.179
,
K.180
,
K.190
,
T.191
,
Y.192
,
K.374
,
Y.379
,
D.381
,
H.382
,
K.383
18
PLIP interactions
:
18 interactions with chain A
Hydrogen bonds:
A:H.171
,
A:T.191
,
A:T.191
,
A:Y.379
,
A:Y.379
,
A:H.382
Water bridges:
A:Y.379
,
A:K.383
Salt bridges:
A:E.179
,
A:K.190
,
A:K.190
,
A:K.374
,
A:K.374
,
A:H.382
,
A:K.383
pi-Cation interactions:
A:H.171
,
A:K.190
,
A:Y.192
GTP.4:
13 residues within 4Å:
Chain B:
I.170
,
H.171
,
V.176
,
E.179
,
K.180
,
K.190
,
T.191
,
Y.192
,
K.374
,
Y.379
,
D.381
,
H.382
,
K.383
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:H.171
,
B:T.191
,
B:T.191
,
B:Y.379
,
B:Y.379
,
B:Y.379
,
B:H.382
Water bridges:
B:K.190
,
B:K.383
Salt bridges:
B:E.179
,
B:K.190
,
B:K.190
,
B:K.374
,
B:K.374
,
B:H.382
,
B:K.383
pi-Cation interactions:
B:H.171
,
B:K.190
,
B:Y.192
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Vitali, J. et al., Three-dimensional structure of the Gly121Tyr dimeric form of ornithine decarboxylase from Lactobacillus 30a. Acta Crystallogr.,Sect.D (1999)
Release Date
2000-02-26
Peptides
PROTEIN (ORNITHINE DECARBOXYLASE):
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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PROTEIN (ORNITHINE DECARBOXYLASE)
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1c4k.1
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