SMTL ID : 1c4k.2 (1 other biounit)

ORNITHINE DECARBOXYLASE MUTANT (GLY121TYR)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: G.197, S.198, S.199, N.202, H.223, S.225, Q.288, D.316, A.318, S.352, H.354, K.355 Chain B: S.394, T.395, S.396 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Q.288, A:A.318, A:K.355 Hydrogen bonds: A:S.198, A:S.199, A:S.352, A:S.352, B:T.395, B:T.395, B:S.396 Water bridges: A:H.223 Salt bridges: A:H.354, A:K.355 pi-Stacking: A:H.223 PLP.3: 15 residues within 4Å: Chain A: S.394, T.395, S.396 Chain B: G.197, S.198, S.199, N.202, H.223, S.225, Q.288, D.316, A.318, S.352, H.354, K.355 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Q.288, B:A.318, B:K.355 Hydrogen bonds: B:S.198, B:S.199, B:S.352, B:S.352, A:T.395, A:T.395, A:T.395, A:S.396 Water bridges: B:H.223 Salt bridges: B:H.354, B:K.355 pi-Stacking: B:H.223

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 13 residues within 4Å: Chain A: I.170, H.171, V.176, E.179, K.180, K.190, T.191, Y.192, K.374, Y.379, D.381, H.382, K.383 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:H.171, A:T.191, A:T.191, A:Y.379, A:Y.379, A:H.382 Water bridges: A:Y.379, A:K.383 Salt bridges: A:E.179, A:K.190, A:K.190, A:K.374, A:K.374, A:H.382, A:K.383 pi-Cation interactions: A:H.171, A:K.190, A:Y.192 GTP.4: 13 residues within 4Å: Chain B: I.170, H.171, V.176, E.179, K.180, K.190, T.191, Y.192, K.374, Y.379, D.381, H.382, K.383 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:H.171, B:T.191, B:T.191, B:Y.379, B:Y.379, B:Y.379, B:H.382 Water bridges: B:K.190, B:K.383 Salt bridges: B:E.179, B:K.190, B:K.190, B:K.374, B:K.374, B:H.382, B:K.383 pi-Cation interactions: B:H.171, B:K.190, B:Y.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vitali, J. et al., Three-dimensional structure of the Gly121Tyr dimeric form of ornithine decarboxylase from Lactobacillus 30a. Acta Crystallogr.,Sect.D (1999)

Release Date

2000-02-26

Peptides

PROTEIN (ORNITHINE DECARBOXYLASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (ORNITHINE DECARBOXYLASE)

Related Entries With Identical Sequence