SMTL ID : 1c4o.1

CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB FROM THERMUS THERMOPHILUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 7 residues within 4Å: Chain A: L.34, A.388, T.389, E.525, R.526, E.560, R.564 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.34, A:R.526 Water bridges: A:L.395 BOG.2: 5 residues within 4Å: Chain A: W.262, R.266, E.269, E.270, G.272 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.269

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: T.37, G.38, T.39, G.40, K.41 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.37, A:G.38, A:T.39, A:G.40, A:K.41 Water bridges: A:K.41, A:K.41, A:T.42, A:T.42 Salt bridges: A:K.41 SO4.4: 1 residues within 4Å: Chain A: R.417 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.418 Salt bridges: A:R.417 SO4.5: 2 residues within 4Å: Chain A: R.25, A.51 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.25 SO4.6: 4 residues within 4Å: Chain A: K.63, D.474, A.475, R.478 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.475 Salt bridges: A:K.63, A:R.478

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machius, M. et al., Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus. Proc.Natl.Acad.Sci.USA (1999)

Release Date

2000-07-26

Peptides

DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB