SMTL ID : 1c5c.1

DECARBOXYLASE CATALYTIC ANTIBODY 21D8-HAPTEN COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TK4: 2-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID(Non-covalent)

TK4.1: 12 residues within 4Å: Chain A: S.34, L.36, R.46, L.89, Y.91, R.96 Chain B: W.33, H.35, V.97, I.99, A.100, W.102 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.89, B:V.97, B:I.99 Hydrogen bonds: A:S.34, B:A.100 Salt bridges: A:R.46, A:R.96, B:H.35 pi-Stacking: A:Y.91, B:H.35 Water bridges: B:I.99

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: Q.160, S.162, S.176, S.177, T.178 Chain B: F.165, P.166, V.168, S.176, L.177, S.178 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.160, A:S.162, A:T.178, B:F.165, B:S.176, B:S.178 GOL.3: 7 residues within 4Å: Chain B: T.9, E.10, L.11, L.107, E.147, P.148, P.201 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.9 Water bridges: B:E.10, B:T.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hotta, K. et al., Catalysis of decarboxylation by a preorganized heterogeneous microenvironment: crystal structures of abzyme 21D8. J.Mol.Biol. (2000)

Release Date

2000-10-11

Peptides

CHIMERIC DECARBOXYLASE ANTIBODY 21D8: A
CHIMERIC DECARBOXYLASE ANTIBODY 21D8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

CHIMERIC DECARBOXYLASE ANTIBODY 21D8

CHIMERIC DECARBOXYLASE ANTIBODY 21D8

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