SMTL ID : 1c6r.1

CRYSTAL STRUCTURE OF REDUCED CYTOCHROME C6 FROM THE GREEN ALGAE SCENEDESMUS OBLIQUUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: D.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.3, H2O.1, H2O.2 CD.2: 2 residues within 4Å: Chain A: D.69, D.71 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.69, A:D.69, A:D.71, A:D.71, H2O.2 CD.3: 2 residues within 4Å: Chain A: H.30 Ligands: HEM.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.30, H2O.2 CD.4: 1 residues within 4Å: Chain A: W.89 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.89, H2O.3

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.5: 23 residues within 4Å: Chain A: N.14, C.15, C.18, H.19, N.24, V.26, I.27, H.30, T.31, L.32, A.36, M.37, F.40, L.41, Q.53, K.58, A.60, M.61, P.62, W.64, V.76, V.80 Ligands: CD.3 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.26, A:L.32, A:A.60, A:M.61, A:W.64, A:V.76, A:V.80 Hydrogen bonds: A:K.58 Water bridges: A:F.40, A:Q.53 Salt bridges: A:H.30, A:H.30, A:K.58 Metal complexes: A:H.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnackenberg, J. et al., Amino acid sequence, crystallization and structure determination of reduced and oxidized cytochrome c6 from the green alga Scenedesmus obliquus. J.Mol.Biol. (1999)

Release Date

2000-04-12

Peptides

CYTOCHROME C6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C6

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