SMTL ID : 1c8r.1

BACTERIORHODOPSIN D96N BR STATE AT 2.0 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

39 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)

LI1.1: 7 residues within 4Å: Chain A: Y.133, V.136, A.139, I.140 Chain C: I.11 Ligands: LI1.8, SQU.44 Ligand excluded by PLIP LI1.2: 13 residues within 4Å: Chain A: Y.131, S.132, F.135, W.138, A.139, A.196 Chain C: W.12, I.203, L.206, L.207 Ligands: LI1.3, LI1.8, SQU.44 Ligand excluded by PLIP LI1.3: 10 residues within 4Å: Chain A: T.142, V.187, L.190, A.196, I.198 Chain C: I.198, P.200 Ligands: LI1.2, LI1.9, LI1.34 Ligand excluded by PLIP LI1.4: 7 residues within 4Å: Chain A: I.198 Chain B: I.191, I.198 Ligands: LI1.10, LI1.18, LI1.19, LI1.34 Ligand excluded by PLIP LI1.5: 1 residues within 4Å: Ligands: LI1.11 Ligand excluded by PLIP LI1.6: 5 residues within 4Å: Chain A: A.14, A.18, L.22, L.61 Ligands: LI1.11 Ligand excluded by PLIP LI1.7: 6 residues within 4Å: Chain A: I.52, T.55, M.56, Y.64, W.80, F.88 Ligand excluded by PLIP LI1.8: 4 residues within 4Å: Chain A: A.139 Ligands: LI1.1, LI1.2, SQU.44 Ligand excluded by PLIP LI1.9: 7 residues within 4Å: Chain A: L.146, F.154 Chain C: V.173, N.176, V.180 Ligands: LI1.3, LI1.40 Ligand excluded by PLIP LI1.10: 11 residues within 4Å: Chain A: F.153, K.172, R.175, N.176, V.179, V.180, S.183, A.184, V.187 Ligands: LI1.4, LI1.24 Ligand excluded by PLIP LI1.11: 6 residues within 4Å: Chain A: L.22, L.25, Y.26, V.29 Ligands: LI1.5, LI1.6 Ligand excluded by PLIP LI1.12: 8 residues within 4Å: Chain A: G.21, T.24, L.28, K.40, Y.43, A.44, T.47, F.54 Ligand excluded by PLIP LI1.13: 7 residues within 4Å: Chain A: L.87, F.88, P.91, L.92, L.95, I.108, V.112 Ligand excluded by PLIP LI1.16: 7 residues within 4Å: Chain A: I.11 Chain B: Y.133, V.136, A.139, I.140 Ligands: SQU.14, LI1.23 Ligand excluded by PLIP LI1.17: 13 residues within 4Å: Chain A: W.12, I.203, L.206, L.207 Chain B: Y.131, S.132, F.135, W.138, A.139, A.196 Ligands: SQU.14, LI1.18, LI1.23 Ligand excluded by PLIP LI1.18: 10 residues within 4Å: Chain A: I.198, P.200 Chain B: T.142, V.187, L.190, A.196, I.198 Ligands: LI1.4, LI1.17, LI1.24 Ligand excluded by PLIP LI1.19: 7 residues within 4Å: Chain B: I.198 Chain C: I.191, I.198 Ligands: LI1.4, LI1.25, LI1.33, LI1.34 Ligand excluded by PLIP LI1.20: 1 residues within 4Å: Ligands: LI1.26 Ligand excluded by PLIP LI1.21: 5 residues within 4Å: Chain B: A.14, A.18, L.22, L.61 Ligands: LI1.26 Ligand excluded by PLIP LI1.22: 6 residues within 4Å: Chain B: I.52, T.55, M.56, Y.64, W.80, F.88 Ligand excluded by PLIP LI1.23: 4 residues within 4Å: Chain B: A.139 Ligands: SQU.14, LI1.16, LI1.17 Ligand excluded by PLIP LI1.24: 7 residues within 4Å: Chain A: V.173, N.176, V.180 Chain B: L.146, F.154 Ligands: LI1.10, LI1.18 Ligand excluded by PLIP LI1.25: 11 residues within 4Å: Chain B: F.153, K.172, R.175, N.176, V.179, V.180, S.183, A.184, V.187 Ligands: LI1.19, LI1.39 Ligand excluded by PLIP LI1.26: 6 residues within 4Å: Chain B: L.22, L.25, Y.26, V.29 Ligands: LI1.20, LI1.21 Ligand excluded by PLIP LI1.27: 8 residues within 4Å: Chain B: G.21, T.24, L.28, K.40, Y.43, A.44, T.47, F.54 Ligand excluded by PLIP LI1.28: 7 residues within 4Å: Chain B: L.87, F.88, P.91, L.92, L.95, I.108, V.112 Ligand excluded by PLIP LI1.31: 7 residues within 4Å: Chain B: I.11 Chain C: Y.133, V.136, A.139, I.140 Ligands: SQU.29, LI1.38 Ligand excluded by PLIP LI1.32: 13 residues within 4Å: Chain B: W.12, I.203, L.206, L.207 Chain C: Y.131, S.132, F.135, W.138, A.139, A.196 Ligands: SQU.29, LI1.33, LI1.38 Ligand excluded by PLIP LI1.33: 10 residues within 4Å: Chain B: I.198, P.200 Chain C: T.142, V.187, L.190, A.196, I.198 Ligands: LI1.19, LI1.32, LI1.39 Ligand excluded by PLIP LI1.34: 7 residues within 4Å: Chain A: I.191, I.198 Chain C: I.198 Ligands: LI1.3, LI1.4, LI1.19, LI1.40 Ligand excluded by PLIP LI1.35: 1 residues within 4Å: Ligands: LI1.41 Ligand excluded by PLIP LI1.36: 5 residues within 4Å: Chain C: A.14, A.18, L.22, L.61 Ligands: LI1.41 Ligand excluded by PLIP LI1.37: 6 residues within 4Å: Chain C: I.52, T.55, M.56, Y.64, W.80, F.88 Ligand excluded by PLIP LI1.38: 4 residues within 4Å: Chain C: A.139 Ligands: SQU.29, LI1.31, LI1.32 Ligand excluded by PLIP LI1.39: 7 residues within 4Å: Chain B: V.173, N.176, V.180 Chain C: L.146, F.154 Ligands: LI1.25, LI1.33 Ligand excluded by PLIP LI1.40: 11 residues within 4Å: Chain C: F.153, K.172, R.175, N.176, V.179, V.180, S.183, A.184, V.187 Ligands: LI1.9, LI1.34 Ligand excluded by PLIP LI1.41: 6 residues within 4Å: Chain C: L.22, L.25, Y.26, V.29 Ligands: LI1.35, LI1.36 Ligand excluded by PLIP LI1.42: 8 residues within 4Å: Chain C: G.21, T.24, L.28, K.40, Y.43, A.44, T.47, F.54 Ligand excluded by PLIP LI1.43: 7 residues within 4Å: Chain C: L.87, F.88, P.91, L.92, L.95, I.108, V.112 Ligand excluded by PLIP

3 x SQU: 2,10,23-TRIMETHYL-TETRACOSANE(Non-covalent)

SQU.14: 11 residues within 4Å: Chain A: L.19, G.23, V.213, S.214, V.217, G.218, L.221, R.225 Ligands: LI1.16, LI1.17, LI1.23 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.19, A:V.213, A:V.217, A:L.221, A:L.221 SQU.29: 11 residues within 4Å: Chain B: L.19, G.23, V.213, S.214, V.217, G.218, L.221, R.225 Ligands: LI1.31, LI1.32, LI1.38 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.19, B:V.213, B:V.217, B:L.221, B:L.221 SQU.44: 11 residues within 4Å: Chain C: L.19, G.23, V.213, S.214, V.217, G.218, L.221, R.225 Ligands: LI1.1, LI1.2, LI1.8 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.19, C:V.213, C:V.217, C:L.221, C:L.221

3 x RET: RETINAL(Covalent)

RET.15: 17 residues within 4Å: Chain A: W.86, T.89, T.90, L.93, M.118, G.122, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.90, A:M.145, A:W.182, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:W.189, A:W.189, A:A.215, A:K.216 RET.30: 17 residues within 4Å: Chain B: W.86, T.89, T.90, L.93, M.118, G.122, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.90, B:M.145, B:W.182, B:W.182, B:Y.185, B:Y.185, B:Y.185, B:W.189, B:W.189, B:A.215, B:K.216 RET.45: 17 residues within 4Å: Chain C: W.86, T.89, T.90, L.93, M.118, G.122, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:T.90, C:M.145, C:W.182, C:W.182, C:Y.185, C:Y.185, C:Y.185, C:W.189, C:W.189, C:A.215, C:K.216

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Luecke, H. et al., Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution. Science (1999)

Release Date

1999-10-20

Peptides

PROTEIN (BACTERIORHODOPSIN): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PROTEIN (BACTERIORHODOPSIN)