SMTL ID : 1c8t.1

HUMAN STROMELYSIN-1 (E202Q) CATALYTIC DOMAIN COMPLEXED WITH RO-26-2812

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.116, H.120, H.126 Ligands: TR1.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.116, A:H.120, A:H.126 ZN.2: 4 residues within 4Å: Chain A: H.66, D.68, H.81, H.94 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.66, A:D.68, A:D.68, A:H.81, A:H.94 ZN.7: 4 residues within 4Å: Chain B: H.116, H.120, H.126 Ligands: TR1.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.116, B:H.120, B:H.126 ZN.8: 4 residues within 4Å: Chain B: H.66, D.68, H.81, H.94 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.66, B:D.68, B:H.81, B:H.94

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.73, G.74, G.76, V.78, D.96, E.99 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.73, A:G.74, A:G.76, A:V.78, A:D.96 CA.4: 6 residues within 4Å: Chain A: A.55, D.56, G.88, I.89, N.90, D.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:G.88, A:N.90, A:D.92 CA.5: 4 residues within 4Å: Chain A: T.20, D.22, D.97, E.99 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.22, A:D.22, A:D.97, A:D.97, A:E.99 CA.9: 6 residues within 4Å: Chain B: D.73, G.74, G.76, V.78, D.96, E.99 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:G.74, B:G.76, B:V.78, B:D.96, B:E.99 CA.10: 6 residues within 4Å: Chain B: A.55, D.56, G.88, I.89, N.90, D.92 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.56, B:G.88, B:N.90, B:D.92, H2O.3 CA.11: 5 residues within 4Å: Chain B: D.22, D.97, D.98, E.99, Q.100 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.22, B:D.97, B:D.97, B:E.99, H2O.3

2 x TR1: 2-(2-{2-[(BIPHENYL-4-YLMETHYL)-AMINO]-3-MERCAPTO-PENTANOYLAMINO}-ACETYLAMINO)-3-METHYL-BUTYRIC ACID METHYL ESTER(Non-covalent)

TR1.6: 18 residues within 4Å: Chain A: N.77, V.78, L.79, A.80, L.112, V.113, H.116, Q.117, H.126, A.132, L.133, Y.135, P.136, L.137, Y.138, H.139 Chain B: P.2 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.79, A:L.112, A:L.112, A:H.116, A:Y.138, A:Y.138 Hydrogen bonds: A:N.77, A:L.79, A:A.80, A:P.136, A:Y.138 pi-Stacking: A:H.116 TR1.12: 20 residues within 4Å: Chain A: P.2 Chain B: G.76, N.77, V.78, L.79, A.80, L.112, V.113, H.116, Q.117, H.120, H.126, A.132, L.133, Y.135, P.136, L.137, Y.138, H.139 Ligands: ZN.7 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.112, B:V.113, B:H.116, B:L.137, B:Y.138, B:Y.138 Hydrogen bonds: B:N.77, B:A.80, B:Q.117, B:P.136, B:Y.138 pi-Stacking: B:H.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steele, D.L. et al., Expression, characterization and structure determination of an active site mutant (Glu202-Gln) of mini-stromelysin-1. Protein Eng. (2000)

Release Date

2000-07-19

Peptides

STROMELYSIN-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

STROMELYSIN-1