SMTL ID : 1cb8.1

CHONDROITINASE AC LYASE FROM FLAVOBACTERIUM HEPARINUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MAN- GCU- XYP- MFU- RAM: methyl alpha-L-fucopyranoside-(1-4)-beta-D-xylopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-2)-[alpha-L-rhamnopyranose-(1-4)]alpha-D-mannopyranose

MAN-GCU-XYP-MFU-RAM.1: 6 residues within 4Å: Chain A: R.393, R.399, D.432, S.433, N.457, A.458 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.432, A:N.457, A:N.457 Water bridges: A:R.399, A:R.399, A:R.399, A:S.433, A:R.393 Salt bridges: A:R.393, A:R.399

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.383, D.385, D.394, Y.395 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.385, A:D.394, A:Y.395, H2O.8, H2O.8

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: S.211, Y.212, E.264, R.266, G.267, R.270 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.211, A:E.264, A:R.266, A:G.267, A:R.270, A:R.270 Water bridges: A:S.211, A:R.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fethiere, J. et al., Crystal structure of chondroitin AC lyase, a representative of a family of glycosaminoglycan degrading enzymes. J.Mol.Biol. (1999)

Release Date

1999-05-14

Peptides

PROTEIN (CHONDROITINASE AC): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (CHONDROITINASE AC)