SMTL ID : 1cdo.1

ALCOHOL DEHYDROGENASE (E.C.1.1.1.1) (EE ISOZYME) COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE (NAD), AND ZINC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.46, T.48, H.68, C.175 Ligands: NAD.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.46, A:H.68, A:C.175, H2O.11 ZN.2: 6 residues within 4Å: Chain A: C.98, G.99, C.101, C.104, C.112, V.113 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.101, A:C.104, A:C.112 ZN.4: 5 residues within 4Å: Chain B: C.46, T.48, H.68, C.175 Ligands: NAD.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.46, B:H.68, B:C.175, H2O.22 ZN.5: 5 residues within 4Å: Chain B: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.98, B:C.101, B:C.104, B:C.112

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 28 residues within 4Å: Chain A: C.46, H.47, T.48, F.94, C.175, T.179, G.200, L.201, G.202, A.203, V.204, V.223, D.224, L.225, K.229, C.269, V.270, G.271, V.275, V.293, G.294, W.295, S.317, M.318, F.319, M.362, R.369 Ligands: ZN.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:T.179, A:V.204 Hydrogen bonds: A:H.47, A:L.201, A:A.203, A:V.204, A:L.225, A:K.229, A:V.270, A:V.293, A:W.295, A:F.319 Water bridges: A:H.47, A:G.202, A:G.202, A:K.229, A:R.369, A:R.369 Salt bridges: A:K.229, A:R.369 NAD.6: 24 residues within 4Å: Chain B: H.47, T.48, C.175, T.179, G.200, L.201, G.202, A.203, V.204, D.224, L.225, K.229, C.269, V.270, G.271, V.275, V.293, G.294, W.295, S.317, M.318, F.319, R.369 Ligands: ZN.4 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:T.179 Hydrogen bonds: B:T.179, B:L.201, B:A.203, B:V.204, B:L.225, B:K.229, B:V.270, B:W.295, B:W.295, B:S.317, B:F.319 Water bridges: B:H.47, B:G.202, B:G.202, B:K.229, B:K.229, B:K.229, B:G.320, B:C.367, B:C.367, B:R.369, B:R.369 Salt bridges: B:H.47, B:H.47, B:R.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramaswamy, S. et al., Crystal structure of cod liver class I alcohol dehydrogenase: substrate pocket and structurally variable segments. Protein Sci. (1996)

Release Date

1996-03-08

Peptides

ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE