SMTL ID : 1ce6.1

MHC CLASS I H-2DB COMPLEXED WITH A SENDAI VIRUS NUCLEOPROTEIN PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- ALA- PRO- GLY- ASN- TYR- PRO- ALA- LEU: PROTEIN (SENDAI VIRUS NUCLEOPROTEIN)(Non-covalent)

PHE-ALA-PRO-GLY-ASN-TYR-PRO-ALA-LEU.1: 27 residues within 4Å: Chain A: M.5, Y.7, E.9, Y.45, E.63, K.66, Q.70, W.73, S.77, N.80, L.81, Y.84, L.95, Q.97, S.99, F.116, T.143, K.146, W.147, S.150, A.152, H.155, Y.156, Y.159, E.163, W.167, Y.171 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.7, A:W.73, A:W.73, A:L.81, A:L.95, A:T.143, A:W.147, A:A.152, A:H.155, A:Y.156, A:Y.159, A:E.163, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Y.84, A:Q.97, A:Q.97, A:K.146, A:Y.156, A:Y.156, A:Y.171 Salt bridges: A:K.146 pi-Stacking: A:H.155, A:W.167 pi-Cation interactions: A:K.66

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.119, R.121 Chain B: I.10 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.121 Hydrogen bonds: B:I.10, B:I.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glithero, A. et al., Crystal structures of two H-2Db/glycopeptide complexes suggest a molecular basis for CTL cross-reactivity. Immunity (1999)

Release Date

1999-03-26

Peptides

PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN): A
PROTEIN (HUMAN BETA-2 MICROGLOBULIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN)

PROTEIN (HUMAN BETA-2 MICROGLOBULIN)

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