SMTL ID : 1cfb.2 (1 other biounit)

CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: N.43, T.44, S.45, P.48, W.51, N.74, T.76, H.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.93 Water bridges: A:H.93 NAG-NAG.5: 8 residues within 4Å: Chain B: N.43, T.44, S.45, P.48, W.51, N.74, T.76, H.93 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.93 Water bridges: B:H.93 NAG-NAG.9: 8 residues within 4Å: Chain C: N.43, T.44, S.45, P.48, W.51, N.74, T.76, H.93 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.93 Water bridges: C:H.93 NAG-NAG.13: 8 residues within 4Å: Chain D: N.43, T.44, S.45, P.48, W.51, N.74, T.76, H.93 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.93 Water bridges: D:H.93

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: S.45, F.46, W.72, A.73, N.74 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.46, A:W.72 Hydrogen bonds: A:S.45, A:N.74 Water bridges: A:N.74 NAG.6: 5 residues within 4Å: Chain B: S.45, F.46, W.72, A.73, N.74 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.46, B:W.72 Hydrogen bonds: B:S.45, B:N.74 Water bridges: B:N.74 NAG.10: 5 residues within 4Å: Chain C: S.45, F.46, W.72, A.73, N.74 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.46, C:W.72 Hydrogen bonds: C:S.45, C:N.74 Water bridges: C:N.74 NAG.14: 5 residues within 4Å: Chain D: S.45, F.46, W.72, A.73, N.74 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.46, D:W.72 Hydrogen bonds: D:S.45, D:N.74 Water bridges: D:N.74

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: L.36, H.37, K.57 Chain D: N.119, P.172, T.173 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Water bridges: A:K.57 Salt bridges: A:H.37, A:K.57 Hydrogen bonds: D:N.119, D:T.173 SO4.7: 6 residues within 4Å: Chain B: L.36, H.37, K.57 Chain C: N.119, P.172, T.173 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Water bridges: B:K.57 Salt bridges: B:H.37, B:K.57 Hydrogen bonds: C:N.119, C:T.173 SO4.11: 6 residues within 4Å: Chain A: N.119, P.172, T.173 Chain C: L.36, H.37, K.57 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:N.119, A:T.173 Water bridges: C:K.57 Salt bridges: C:H.37, C:K.57 SO4.15: 6 residues within 4Å: Chain B: N.119, P.172, T.173 Chain D: L.36, H.37, K.57 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Water bridges: D:K.57 Salt bridges: D:H.37, D:K.57 Hydrogen bonds: B:N.119, B:T.173

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: S.70, P.71, I.131, E.132, N.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.70, A:N.134 Water bridges: A:N.134 NA.8: 5 residues within 4Å: Chain B: S.70, P.71, I.131, E.132, N.134 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.71, B:N.134 Water bridges: B:N.134 NA.12: 5 residues within 4Å: Chain C: S.70, P.71, I.131, E.132, N.134 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:P.71, C:N.134 Water bridges: C:N.134 NA.16: 5 residues within 4Å: Chain D: S.70, P.71, I.131, E.132, N.134 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.134, D:N.134 Water bridges: D:N.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, A.H. et al., Crystal structure of tandem type III fibronectin domains from Drosophila neuroglian at 2.0 A. Neuron (1994)

Release Date

1994-11-30

Peptides

DROSOPHILA NEUROGLIAN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

DROSOPHILA NEUROGLIAN

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