SMTL ID : 1cg6.1

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH 5'-DEOXY-5'-METHYLTHIOADENOSINE AND SULFATE AT 1.7 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: MTA.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.18, A:A.94 Salt bridges: A:R.60, A:H.61 SO4.3: 8 residues within 4Å: Chain B: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: MTA.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.18, B:A.94 Salt bridges: B:R.60, B:H.61 SO4.5: 8 residues within 4Å: Chain C: G.17, T.18, R.60, H.61, T.93, A.94, T.197 Ligands: MTA.6 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.18, C:A.94 Salt bridges: C:R.60, C:H.61

3 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.2: 16 residues within 4Å: Chain A: T.18, P.69, A.94, C.95, G.96, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 Chain C: H.137 Ligands: SO4.1 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain A Water bridges: C:H.137 Hydrogen bonds: A:T.18, A:M.196, A:D.222, A:D.222 pi-Stacking: A:F.177 MTA.4: 16 residues within 4Å: Chain A: H.137 Chain B: T.18, P.69, A.94, C.95, G.96, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 Ligands: SO4.3 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Water bridges: A:H.137 Hydrogen bonds: B:T.18, B:M.196, B:D.222, B:D.222 pi-Stacking: B:F.177 MTA.6: 16 residues within 4Å: Chain B: H.137 Chain C: T.18, P.69, A.94, C.95, G.96, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 Ligands: SO4.5 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain C Water bridges: B:H.137 Hydrogen bonds: C:T.18, C:M.196, C:D.222, C:D.222 pi-Stacking: C:F.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., The structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase at 1.7 A resolution provides insights into substrate binding and catalysis. Structure Fold.Des. (1999)

Release Date

1999-07-05

Peptides

PROTEIN (5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PROTEIN (5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE)

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