SMTL ID : 1clz.1 (1 other biounit)

IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC-FUC.1: 14 residues within 4Å: Chain A: H.31, Y.37 Chain B: D.31, Y.32, Y.33, Y.35, Q.53, G.99, L.100, D.101, G.103, A.104, W.105 Ligands: NON.2 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.105, A:Y.37, B:Y.32 Hydrogen bonds: B:Y.35, B:L.100, B:L.100, B:A.104, B:Y.35, A:H.31, B:Y.33, B:Q.53

1 x NON: METHYL NONANOATE (ESTER)(Non-covalent)

NON.2: 5 residues within 4Å: Chain B: D.31, Y.32, Q.53, D.101 Ligands: NAG-GAL-FUC-FUC.1 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.31 Hydrogen bonds: B:Y.32, B:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeffrey, P.D. et al., The x-ray structure of an anti-tumour antibody in complex with antigen. Nat.Struct.Biol. (1995)

Release Date

1996-08-01

Peptides

IGG FAB (IGG3, KAPPA): A
IGG FAB (IGG3, KAPPA): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IGG FAB (IGG3, KAPPA)

IGG FAB (IGG3, KAPPA)

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