SMTL ID : 1cqq.1

TYPE 2 RHINOVIRUS 3C PROTEASE WITH AG7088 INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x AG7: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER(Covalent)

AG7.1: 25 residues within 4Å: Chain A: N.22, G.23, K.24, F.25, H.40, E.71, N.107, I.125, L.126, L.127, S.128, N.130, T.142, K.143, S.144, G.145, Y.146, C.147, H.161, V.162, G.163, G.164, N.165, G.166, F.170 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.25, A:H.40, A:I.125, A:L.127, A:L.127, A:L.127, A:F.170 Hydrogen bonds: A:S.128, A:T.142, A:T.142, A:G.145, A:C.147, A:H.161, A:V.162, A:G.164, A:G.164, A:N.165 Water bridges: A:G.129, A:N.165, A:G.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matthews, D.A. et al., Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-09-20

Peptides

TYPE 2 RHINOVIRUS 3C PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TYPE 2 RHINOVIRUS 3C PROTEASE