SMTL ID : 1cx8.4 (3 other biounits)

CRYSTAL STRUCTURE OF THE ECTODOMAIN OF HUMAN TRANSFERRIN RECEPTOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.130 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: F.66, N.196, E.262 Chain B: W.520, F.639 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.520, B:F.639 NAG.3: 2 residues within 4Å: Chain A: N.606, L.609 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.606, A:L.609 NAG.7: 1 residues within 4Å: Chain B: N.130 No protein-ligand interaction detected (PLIP) NAG.8: 5 residues within 4Å: Chain A: W.520, F.639 Chain B: F.66, N.196, E.262 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.520, A:F.639 NAG.9: 2 residues within 4Å: Chain B: N.606, L.609 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.606

6 x SM: SAMARIUM (III) ION(Non-covalent)

SM.4: 2 residues within 4Å: Chain A: D.527, D.636 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.527, A:D.527, A:D.636, A:D.636 SM.5: 5 residues within 4Å: Chain A: D.186, T.189, P.190, E.344, E.347 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.186, A:T.189, A:T.189, A:E.344, A:E.347 SM.6: 2 residues within 4Å: Chain A: E.454, E.457 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.454, A:E.457 SM.10: 2 residues within 4Å: Chain B: D.527, D.636 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.527, B:D.527, B:D.636, B:D.636 SM.11: 6 residues within 4Å: Chain B: D.186, T.189, P.190, F.192, E.344, E.347 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:T.189, B:T.189, B:E.344, B:E.347, B:E.347 SM.12: 2 residues within 4Å: Chain B: E.454, E.457 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.454, B:E.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawrence, C.M. et al., Crystal structure of the ectodomain of human transferrin receptor. Science (1999)

Release Date

1999-09-09

Peptides

TRANSFERRIN RECEPTOR PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

TRANSFERRIN RECEPTOR PROTEIN

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