SMTL ID : 1cxu.1

1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 4 residues within 4Å: Chain A: R.132, P.134, T.135, S.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.135, A:T.135, A:S.136 Salt bridges: A:R.132 CIT.3: 4 residues within 4Å: Chain B: R.132, P.134, T.135, S.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.135, B:S.136 Water bridges: B:T.135 Salt bridges: B:R.132

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.43, T.44, A.143, M.146 Chain B: T.60 Ligands: GOL.4 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:T.60, A:G.139, A:G.139 Hydrogen bonds: A:V.43 GOL.4: 6 residues within 4Å: Chain A: T.60 Chain B: V.43, T.44, A.143, M.146 Ligands: GOL.2 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:T.60, B:G.139, B:G.139 Hydrogen bonds: B:V.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lubkowski, J. et al., Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant. Biochemistry (1999)

Release Date

1999-09-08

Peptides

PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE)

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