SMTL ID : 1cy5.1

CRYSTAL STRUCTURE OF THE APAF-1 CARD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.17, Q.50 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.17, A:E.17, H2O.4 ZN.2: 3 residues within 4Å: Chain A: D.27, I.30, E.40 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.27, A:E.40, A:E.40, H2O.4 ZN.3: 2 residues within 4Å: Chain A: H.28, D.32 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.28, A:D.32, A:D.32, H2O.4 ZN.4: 1 residues within 4Å: Chain A: E.41 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.41, A:E.41 ZN.5: 3 residues within 4Å: Chain A: H.28, H.77, E.78 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.28, A:E.78, H2O.5, H2O.5

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 6 residues within 4Å: Chain A: C.8, Q.11, H.12, L.86, D.89, G.90 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vaughn, D.E. et al., Crystal structure of Apaf-1 caspase recruitment domain: an alpha-helical Greek key fold for apoptotic signaling. J.Mol.Biol. (1999)

Release Date

1999-09-13

Peptides

PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1)

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