SMTL ID : 1cyd.1

CARBONYL REDUCTASE COMPLEXED WITH NADPH AND 2-PROPANOL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 31 residues within 4Å: Chain A: G.14, G.16, K.17, G.18, I.19, T.38, R.39, T.40, V.59, D.60, L.61, G.62, N.83, A.84, A.85, R.102, V.106, V.134, S.135, S.136, Y.149, K.153, P.179, T.180, V.181, V.182, T.184, D.185, M.186, G.187 Ligands: IPA.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:P.179 Hydrogen bonds: A:G.14, A:G.16, A:K.17, A:I.19, A:T.38, A:R.39, A:T.40, A:D.60, A:L.61, A:G.62, A:N.83, A:N.83, A:R.102, A:K.153, A:V.182, A:V.182, A:D.185, A:M.186, A:G.187 Water bridges: A:K.17, A:G.18, A:G.20, A:T.40, A:D.43, A:D.43, A:D.185 Salt bridges: A:K.17, A:R.39 NDP.3: 31 residues within 4Å: Chain B: G.14, G.16, K.17, G.18, I.19, T.38, R.39, T.40, V.59, D.60, L.61, G.62, N.83, A.84, A.85, R.102, V.106, V.134, S.135, S.136, Y.149, K.153, P.179, T.180, V.181, V.182, T.184, D.185, M.186, G.187 Ligands: IPA.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:P.179 Hydrogen bonds: B:G.16, B:K.17, B:I.19, B:R.39, B:T.40, B:T.40, B:D.60, B:L.61, B:G.62, B:N.83, B:N.83, B:R.102, B:Y.149, B:K.153, B:V.182, B:V.182, B:T.184, B:T.184, B:D.185, B:M.186, B:G.187 Water bridges: B:K.17, B:G.18, B:G.20, B:T.40, B:D.43, B:D.185 Salt bridges: B:K.17, B:R.39 NDP.5: 31 residues within 4Å: Chain C: G.14, G.16, K.17, G.18, I.19, T.38, R.39, T.40, D.43, V.59, D.60, L.61, N.83, A.84, A.85, R.102, V.106, V.134, S.135, S.136, Y.149, K.153, P.179, T.180, V.181, V.182, T.184, D.185, M.186, G.187 Ligands: IPA.6 30 PLIP interactions: 30 interactions with chain C Hydrophobic interactions: C:P.179 Hydrogen bonds: C:G.16, C:K.17, C:I.19, C:T.38, C:R.39, C:T.40, C:D.43, C:D.60, C:D.60, C:L.61, C:G.62, C:N.83, C:N.83, C:R.102, C:R.102, C:K.153, C:V.182, C:V.182, C:D.185, C:M.186, C:G.187 Water bridges: C:G.20, C:T.40, C:D.43, C:D.185, C:D.185 Salt bridges: C:K.17, C:R.39 pi-Cation interactions: C:R.39 NDP.7: 31 residues within 4Å: Chain D: G.14, G.16, K.17, G.18, I.19, T.38, R.39, T.40, V.59, D.60, L.61, G.62, N.83, A.84, A.85, R.102, V.106, V.134, S.135, S.136, Y.149, K.153, P.179, T.180, V.181, V.182, T.184, D.185, M.186, G.187 Ligands: IPA.8 33 PLIP interactions: 33 interactions with chain D Hydrophobic interactions: D:P.179 Hydrogen bonds: D:G.14, D:G.16, D:K.17, D:K.17, D:I.19, D:T.38, D:R.39, D:T.40, D:T.40, D:D.60, D:L.61, D:G.62, D:N.83, D:N.83, D:R.102, D:Y.149, D:K.153, D:V.182, D:V.182, D:T.184, D:D.185, D:M.186, D:G.187 Water bridges: D:K.17, D:G.18, D:G.20, D:R.39, D:T.40, D:D.43, D:D.185 Salt bridges: D:K.17, D:R.39

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 6 residues within 4Å: Chain A: S.136, L.146, Y.149, V.181, V.190 Ligands: NDP.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.146, A:Y.149, A:V.181, A:V.190 Hydrogen bonds: A:S.136, A:Y.149, A:Y.149 IPA.4: 5 residues within 4Å: Chain B: S.136, L.146, Y.149, V.190 Ligands: NDP.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.149, B:V.190 Hydrogen bonds: B:S.136, B:Y.149 IPA.6: 4 residues within 4Å: Chain C: S.136, L.146, Y.149 Ligands: NDP.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.146, C:Y.149 Hydrogen bonds: C:S.136, C:Y.149, C:Y.149 IPA.8: 6 residues within 4Å: Chain D: S.136, L.146, Y.149, M.186, V.190 Ligands: NDP.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.146, D:Y.149, D:V.190 Hydrogen bonds: D:S.136, D:Y.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, N. et al., Crystal structure of the ternary complex of mouse lung carbonyl reductase at 1.8 A resolution: the structural origin of coenzyme specificity in the short-chain dehydrogenase/reductase family. Structure (1996)

Release Date

1996-10-14

Peptides

CARBONYL REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CARBONYL REDUCTASE