SMTL ID : 1d0j.2 (3 other biounits)

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A M4-1BB PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

3 x ACE- GLY- ALA- ALA- GLN- GLU- GLU: 4-1BB LIGAND RECEPTOR(Non-covalent)

ACE-GLY-ALA-ALA-GLN-GLU-GLU.1: 13 residues within 4Å: Chain A: R.60, Y.62, D.66, F.77, F.114, R.115, S.120, S.121, S.122, I.132, A.133, S.134, G.135 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.77, A:F.114, A:I.132, A:A.133 Hydrogen bonds: A:D.66, A:R.115, A:S.121, A:S.122, A:S.122, A:A.133, A:A.133, A:G.135, A:G.135 Water bridges: A:D.66, A:D.66 Salt bridges: A:R.60 ACE-GLY-ALA-ALA-GLN-GLU-GLU.2: 12 residues within 4Å: Chain B: R.60, Y.62, D.66, F.77, F.114, S.120, S.121, S.122, I.132, A.133, S.134, G.135 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.77, B:F.114 Hydrogen bonds: B:Y.62, B:D.66, B:D.66, B:S.122, B:A.133, B:A.133, B:G.135, B:G.135 Water bridges: B:R.60, B:Y.62 Salt bridges: B:R.60 ACE-GLY-ALA-ALA-GLN-GLU-GLU.3: 12 residues within 4Å: Chain C: R.60, Y.62, D.66, F.77, F.114, S.120, S.121, S.122, I.132, A.133, S.134, G.135 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:F.77, C:F.114, C:A.133 Hydrogen bonds: C:D.66, C:D.66, C:S.122, C:A.133, C:A.133, C:G.135 Salt bridges: C:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, H. et al., The structural basis for the recognition of diverse receptor sequences by TRAF2. Mol.Cell (1999)

Release Date

2000-03-08

Peptides

TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2

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