SMTL ID : 1d0m.1

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A AND (GLCNAC)2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x NDG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-NAG.1: 14 residues within 4Å: Chain A: K.81, G.121, V.122, E.123, T.124, R.125, V.129, M.130, G.131, S.177, Q.186, N.300, Y.305 Ligands: BLG.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.123, A:Q.186, A:N.300, A:G.121, A:R.125, A:R.125 Water bridges: A:Y.78, A:Y.78 Salt bridges: A:R.125

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.198, S.200, D.202, H.204, D.212 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.198, A:S.200, A:H.204, A:D.212, A:D.212

1 x BLG: 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE(Non-covalent)

BLG.3: 16 residues within 4Å: Chain A: E.123, R.149, Y.152, S.177, F.178, A.179, A.181, Q.186, F.187, M.188, S.191, Y.220, Y.299, N.300, H.301 Ligands: NDG-NAG.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.187, A:Y.220, A:Y.299 Hydrogen bonds: A:E.123, A:R.149, A:Y.152, A:S.177, A:F.178, A:M.188, A:S.191, A:Y.220, A:Y.220, A:Y.299, A:N.300 Water bridges: A:Q.59, A:Q.59, A:R.149, A:Y.152, A:Y.152, A:S.190, A:R.298 Salt bridges: A:H.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Asselt, E.J. et al., Crystallographic studies of the interactions of Escherichia coli lytic transglycosylase Slt35 with peptidoglycan. Biochemistry (2000)

Release Date

2000-03-06

Peptides

35KD SOLUBLE LYTIC TRANSGLYCOSYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

35KD SOLUBLE LYTIC TRANSGLYCOSYLASE

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