SMTL ID : 1d1j.1

CRYSTAL STRUCTURE OF HUMAN PROFILIN II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.88, N.99, H.119, G.120 Chain C: R.74 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:N.99, A:G.120 Water bridges: A:R.88, A:G.121, A:G.121, C:R.74 Salt bridges: A:R.88, A:H.119, C:R.74 SO4.2: 5 residues within 4Å: Chain B: R.88, N.99, H.119, G.120 Chain D: R.74 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:N.99, B:G.120 Water bridges: B:V.118, B:H.119, B:G.121 Salt bridges: B:R.88, B:H.119, D:R.74 SO4.3: 5 residues within 4Å: Chain A: R.74 Chain C: R.88, N.99, H.119, G.120 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.99, C:G.120 Water bridges: C:R.88, C:R.88, C:G.121 Salt bridges: C:R.88, C:H.119, A:R.74 SO4.5: 5 residues within 4Å: Chain B: R.74 Chain D: R.88, N.99, H.119, G.120 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:R.88, D:N.99, D:G.120 Water bridges: D:G.121, D:G.121, B:R.74 Salt bridges: D:H.119, B:R.74

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.4: 10 residues within 4Å: Chain C: S.5, Y.6, N.9, C.12, Y.133 Chain D: S.5, Y.6, N.9, C.12, Y.133 No protein-ligand interaction detected (PLIP)

1 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)

PG5.6: 5 residues within 4Å: Chain D: W.3, D.26, A.27, Y.29, W.31 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nodelman, I.M. et al., X-ray structure determination of human profilin II: A comparative structural analysis of human profilins. J.Mol.Biol. (1999)

Release Date

2000-12-22

Peptides

PROFILIN II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROFILIN II