SMTL ID : 1d2s.1

CRYSTAL STRUCTURE OF THE N-TERMINAL LAMININ G-LIKE DOMAIN OF SHBG IN COMPLEX WITH DIHYDROTESTOSTERONE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.38, E.40, A.142 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.38, A:E.40, A:A.142, H2O.1, H2O.2 CA.2: 1 residues within 4Å: Chain A: H.118 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.118 CA.4: 3 residues within 4Å: Chain B: D.38, E.40, A.142 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.38, B:E.40, B:A.142, H2O.6, H2O.6 CA.5: 1 residues within 4Å: Chain B: H.118 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.118

2 x DHT: 5-ALPHA-DIHYDROTESTOSTERONE(Non-covalent)

DHT.3: 13 residues within 4Å: Chain A: T.28, S.29, S.30, F.44, G.46, D.53, W.54, F.55, N.70, V.93, M.95, I.123, L.153 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.55, A:F.55, A:F.55, A:V.93, A:I.123 Hydrogen bonds: A:N.70 DHT.6: 13 residues within 4Å: Chain B: T.28, S.29, S.30, F.44, G.46, D.53, W.54, F.55, N.70, V.93, M.95, I.123, L.153 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.55, B:F.55, B:F.55, B:V.93, B:I.123 Hydrogen bonds: B:N.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grishkovskaya, I. et al., Crystal structure of human sex hormone-binding globulin: steroid transport by a laminin G-like domain. EMBO J. (2000)

Release Date

2000-06-28

Peptides

SEX HORMONE-BINDING GLOBULIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SEX HORMONE-BINDING GLOBULIN