SMTL ID : 1d4d.1

CRYSTAL STRUCTURE OF THE SUCCINATE COMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

4 x HEC: HEME C(Covalent)(Non-covalent)

HEC.1: 20 residues within 4Å: Chain A: V.58, S.59, S.63, H.64, L.65, Y.84, C.85, C.88, H.89, F.91, L.167, A.169, H.338, V.374, M.375, A.431, G.434, Y.435, L.438 Ligands: HEC.2 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:V.58, A:L.65, A:L.65, A:Y.84, A:F.91, A:F.91, A:L.167, A:H.338, A:V.374, A:L.438, A:L.438 Metal complexes: A:H.64, A:H.89 HEC.2: 20 residues within 4Å: Chain A: C.39, H.43, G.44, D.45, L.46, L.49, P.60, H.61, I.69, A.70, C.71, C.74, H.75, C.85, F.93, D.94, M.95, P.96 Ligands: HEC.1, HEC.4 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:H.43, A:L.46, A:L.46, A:L.49, A:P.60, A:P.60, A:I.69, A:F.93 Water bridges: A:H.61 Metal complexes: A:H.61, A:H.75 HEC.3: 19 residues within 4Å: Chain A: A.7, H.10, G.15, C.16, S.18, C.19, H.20, K.24, G.25, G.26, V.27, L.32, T.72, K.76, G.77, H.78, E.79, Y.298 Ligands: HEC.4 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:A.7, A:V.27, A:L.32, A:T.72, A:Y.298 Hydrogen bonds: A:G.77, A:H.78, A:E.79 Water bridges: A:K.76, A:K.76 Salt bridges: A:K.76 pi-Stacking: A:H.78 Metal complexes: A:H.20, A:H.78 HEC.4: 14 residues within 4Å: Chain A: L.6, F.9, H.10, M.13, S.18, C.19, Q.38, C.39, C.42, H.43, H.75, P.96 Ligands: HEC.2, HEC.3 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.6, A:Q.38, A:H.75, A:P.96, A:P.96 Metal complexes: A:H.10, A:H.43

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 42 residues within 4Å: Chain A: I.132, G.133, S.134, G.135, G.136, A.137, L.155, E.156, K.157, E.158, G.162, G.163, N.164, T.165, L.167, A.168, A.169, G.170, G.171, S.276, R.277, V.278, A.312, A.313, G.314, T.336, N.337, H.338, G.340, D.344, M.375, H.504, H.505, G.534, E.535, R.545, G.548, N.549, A.550, I.551, I.554 Ligands: SIN.6 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:N.164, A:L.167 Hydrogen bonds: A:G.135, A:A.137, A:K.157, A:G.162, A:N.164, A:N.164, A:T.165, A:T.165, A:A.169, A:G.170, A:G.171, A:G.171, A:V.278, A:V.278, A:G.314, A:D.344, A:H.505, A:E.535, A:R.545, A:G.548, A:A.550, A:I.551 Water bridges: A:G.138, A:K.157, A:G.163, A:G.315, A:V.536 pi-Cation interactions: A:H.504

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.6: 12 residues within 4Å: Chain A: G.170, M.236, H.365, M.375, T.377, E.378, R.402, H.504, R.545, G.547, G.548 Ligands: FAD.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.170, A:T.377, A:E.378, A:G.548 Salt bridges: A:H.365, A:R.402, A:R.402, A:H.504, A:R.545

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leys, D. et al., Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1. Nat.Struct.Biol. (1999)

Release Date

1999-12-01

Peptides

FLAVOCYTOCHROME C FUMARATE REDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FLAVOCYTOCHROME C FUMARATE REDUCTASE

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