SMTL ID : 1d5c.1

CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM RAB6 COMPLEXED WITH GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.15 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.15, H2O.2, H2O.2, H2O.2, H2O.3

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: Q.10, A.11, V.12, G.13, K.14, T.15, S.16, F.26, D.27, Y.30, S.32, N.114, K.115, D.117, L.118, S.144, A.145, K.146 Ligands: MG.1 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:A.11, A:V.12, A:G.13, A:K.14, A:T.15, A:T.15, A:S.16, A:S.16, A:Y.30, A:Y.30, A:S.32, A:S.32, A:N.114, A:K.115, A:K.115, A:A.145, A:K.146 Water bridges: A:Q.10, A:Q.10, A:K.14, A:T.15, A:T.33, A:T.33, A:T.33, A:K.115 Salt bridges: A:K.14, A:D.117 pi-Stacking: A:F.26, A:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chattopadhyay, D. et al., Structure of the nucleotide-binding domain of Plasmodium falciparum rab6 in the GDP-bound form. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-08-30

Peptides

RAB6 GTPASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAB6 GTPASE