SMTL ID : 1d6v.1

CONFORMATION EFFECTS IN BIOLOGICAL CATALYSIS INTRODUCED BY OXY-COPE ANTIBODY MATURATION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: R.61, E.79 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.79, H2O.2 CD.2: 2 residues within 4Å: Chain A: N.138 Chain B: H.171 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.171, H2O.2 CD.3: 1 residues within 4Å: Chain A: K.45 No protein-ligand interaction detected (PLIP) CD.4: 1 residues within 4Å: Chain A: E.81 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.81, A:E.81, H2O.1, H2O.3

1 x HOP: (1S,2S,5S)2-(4-GLUTARIDYLBENZYL)-5-PHENYL-1-CYCLOHEXANOL(Non-covalent)

HOP.5: 13 residues within 4Å: Chain A: F.36, L.89, Y.91, Y.96 Chain B: E.35, V.37, W.47, E.50, G.99, H.100, Y.105, D.108, W.110 19 PLIP interactions: 12 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:E.35, B:E.35, B:V.37, B:H.100, B:D.108, B:W.110, A:F.36, A:F.36, A:L.89, A:Y.91, A:Y.91, A:Y.91 Hydrogen bonds: B:E.35, B:H.100, B:H.100, B:H.100, A:Y.96 pi-Stacking: B:H.100, B:Y.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mundorff, E.C. et al., Conformational effects in biological catalysis: an antibody-catalyzed oxy-cope rearrangement. Biochemistry (2000)

Release Date

2000-02-09

Peptides

CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (LIGHT CHAIN): A
CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (HEAVY CHAIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (LIGHT CHAIN)

CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (HEAVY CHAIN)

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