SMTL ID : 1d6y.1

CRYSTAL STRUCTURE OF E. COLI COPPER-CONTAINING AMINE OXIDASE ANAEROBICALLY REDUCED WITH BETA-PHENYLETHYLAMINE AND COMPLEXED WITH NITRIC OXIDE.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.524, H.526, H.689 Ligands: NO.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.524, A:H.526, A:H.689 CU.7: 4 residues within 4Å: Chain B: H.524, H.526, H.689 Ligands: NO.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.524, B:H.526, B:H.689, NO.11

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: K.133, D.533, L.534, D.535, D.678, A.679 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.533, A:L.534, A:D.535, A:D.678, A:A.679, H2O.6 CA.3: 6 residues within 4Å: Chain A: E.573, H.644, E.647, Y.667, D.670, E.672 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.573, A:Y.667, H2O.12 CA.8: 6 residues within 4Å: Chain B: K.133, D.533, L.534, D.535, D.678, A.679 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.533, B:L.534, B:D.535, B:D.678, B:A.679, H2O.36 CA.9: 3 residues within 4Å: Chain B: E.573, Y.667, E.672 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.573, B:Y.667, B:E.672, H2O.37, H2O.37

2 x HY1: PHENYLACETALDEHYDE(Non-covalent)

HY1.4: 11 residues within 4Å: Chain A: F.192, T.223, P.224, L.225, W.257, Y.381, D.383, Y.387, V.463, G.464, Y.466 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.192, A:T.223, A:L.225, A:W.257, A:Y.381, A:Y.387, A:Y.387 HY1.10: 11 residues within 4Å: Chain B: F.192, T.223, P.224, L.225, W.257, Y.381, D.383, Y.387, V.463, G.464, Y.466 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.192, B:T.223, B:L.225, B:W.257, B:Y.381, B:Y.387, B:Y.387

2 x NO: NITRIC OXIDE(Non-covalent)

NO.5: 6 residues within 4Å: Chain A: Y.466, E.490, H.524, H.526, H.689 Ligands: CU.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.491, A:A.491 NO.11: 6 residues within 4Å: Chain B: Y.466, E.490, H.524, H.526, H.689 Ligands: CU.7 No protein-ligand interaction detected (PLIP)

1 x PEA: 2-PHENYLETHYLAMINE(Non-covalent)

PEA.6: 4 residues within 4Å: Chain A: D.102, E.103, Q.106, L.169 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.102, A:E.103

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 2 residues within 4Å: Chain A: N.447 Chain B: R.425 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.447 Water bridges: B:I.396, B:I.396, B:R.425, B:R.425 GOL.13: 3 residues within 4Å: Chain B: D.20, Q.307, S.404 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.20 Water bridges: B:D.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilmot, C.M. et al., Visualization of dioxygen bound to copper during enzyme catalysis. Science (1999)

Release Date

2000-02-02

Peptides

COPPER AMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COPPER AMINE OXIDASE

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