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SMTL ID : 1d7c.1
CYTOCHROME DOMAIN OF CELLOBIOSE DEHYDROGENASE, PH 4.6
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
homo-dimer
Ligands
2 x
NAG
-
NAG
-
BMA
:
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.1:
5 residues within 4Å:
Chain A:
P.9
,
N.111
,
S.112
,
T.113
,
H.114
No protein-ligand interaction detected (PLIP)
NAG-NAG-BMA.2:
4 residues within 4Å:
Chain B:
P.9
,
N.111
,
T.113
,
H.114
No protein-ligand interaction detected (PLIP)
5 x
CD
:
CADMIUM ION
(Non-covalent)
CD.3:
3 residues within 4Å:
Chain A:
P.21
,
D.24
Ligands:
HEM.9
5
PLIP interactions
:
3 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:P.21
,
A:D.24
,
A:D.24
,
H
2
O.2
,
H
2
O.7
CD.4:
4 residues within 4Å:
Chain A:
E.107
,
Y.184
,
N.186
,
G.187
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:E.107
,
H
2
O.5
,
H
2
O.5
CD.5:
1 residues within 4Å:
Chain A:
D.188
1
PLIP interactions
:
1 interactions with chain A
Metal complexes:
A:D.188
CD.6:
2 residues within 4Å:
Chain A:
D.165
Chain B:
D.165
5
PLIP interactions
:
1 interactions with chain B
,
2 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
B:D.165
,
A:D.165
,
A:D.165
,
H
2
O.2
,
H
2
O.9
CD.8:
3 residues within 4Å:
Chain B:
P.21
,
D.24
Ligands:
HEM.7
5
PLIP interactions
:
3 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:P.21
,
B:D.24
,
B:D.24
,
H
2
O.7
,
H
2
O.7
2 x
HEM
:
PROTOPORPHYRIN IX CONTAINING FE
(Non-covalent)
HEM.7:
21 residues within 4Å:
Chain A:
W.56
,
G.58
,
I.59
,
A.64
,
M.65
,
L.70
,
L.71
,
V.72
,
Y.90
,
Q.92
,
P.93
,
A.142
,
A.144
,
F.160
,
E.162
,
H.163
,
F.166
,
F.168
Chain B:
P.21
,
D.24
Ligands:
CD.8
19
PLIP interactions
:
19 interactions with chain A
,
Hydrophobic interactions:
A:W.56
,
A:M.65
,
A:L.70
,
A:Y.90
,
A:Q.92
,
A:P.93
,
A:A.142
,
A:A.144
,
A:F.160
,
A:F.160
,
A:E.162
,
A:E.162
,
A:F.166
,
A:F.166
,
A:F.168
Hydrogen bonds:
A:M.65
Water bridges:
A:N.66
pi-Stacking:
A:F.166
Metal complexes:
A:H.163
HEM.9:
21 residues within 4Å:
Chain A:
P.21
,
D.24
Chain B:
W.56
,
G.58
,
I.59
,
A.64
,
M.65
,
L.70
,
L.71
,
V.72
,
Y.90
,
Q.92
,
P.93
,
A.142
,
A.144
,
F.160
,
E.162
,
H.163
,
F.166
,
F.168
Ligands:
CD.3
20
PLIP interactions
:
20 interactions with chain B
,
Hydrophobic interactions:
B:W.56
,
B:W.56
,
B:M.65
,
B:L.70
,
B:Y.90
,
B:Q.92
,
B:P.93
,
B:A.142
,
B:A.144
,
B:E.162
,
B:E.162
,
B:F.166
,
B:F.166
,
B:F.168
Hydrogen bonds:
B:M.65
,
B:Y.90
Water bridges:
B:N.66
pi-Stacking:
B:H.163
,
B:F.166
Metal complexes:
B:H.163
1 x
1PG
:
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
(Non-covalent)
1PG.10:
7 residues within 4Å:
Chain A:
Q.1
,
S.2
,
F.168
Chain B:
Q.1
,
S.2
,
F.168
,
G.170
2
PLIP interactions
:
1 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:Q.1
,
B:Q.1
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hallberg, B.M. et al., A new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase. Structure Fold.Des. (2000)
Release Date
2000-10-18
Peptides
CELLOBIOSE DEHYDROGENASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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