- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: L.78, S.80, T.303, V.305, D.307
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:L.78, A:S.80, A:T.303, A:V.305, A:D.307
K.5: 5 residues within 4Å:- Chain B: L.78, S.80, T.303, V.305, D.307
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:L.78, B:S.80, B:T.303, B:V.305, B:D.307
K.8: 5 residues within 4Å:- Chain C: L.78, S.80, T.303, V.305, D.307
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:L.78, C:S.80, C:T.303, C:V.305, C:D.307
K.11: 5 residues within 4Å:- Chain D: L.78, S.80, T.303, V.305, D.307
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:L.78, D:S.80, D:T.303, D:V.305, D:D.307
- 4 x NMA: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-2-METHYLALANINE(Non-covalent)
NMA.3: 16 residues within 4Å:- Chain A: Q.52, T.110, G.111, A.112, W.138, H.139, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
- Chain C: Y.301, T.302, T.303
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:Q.52, A:W.138, A:E.210, C:Y.301
- Hydrogen bonds: A:Q.52, A:T.110, A:G.111, A:A.112, A:N.115, A:S.215, A:Q.246, A:K.272, A:K.272, C:T.303
- Salt bridges: A:K.272, A:R.406
NMA.6: 16 residues within 4Å:- Chain B: Q.52, T.110, G.111, A.112, W.138, H.139, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
- Chain D: Y.301, T.302, T.303
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:Q.52, B:W.138, B:E.210, D:Y.301
- Hydrogen bonds: B:Q.52, B:T.110, B:G.111, B:A.112, B:N.115, B:S.215, B:Q.246, B:K.272, B:K.272, D:T.303
- Salt bridges: B:K.272, B:R.406
NMA.9: 16 residues within 4Å:- Chain A: Y.301, T.302, T.303
- Chain C: Q.52, T.110, G.111, A.112, W.138, H.139, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
16 PLIP interactions:13 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:Q.52, C:W.138, C:E.210, A:Y.301
- Hydrogen bonds: C:Q.52, C:G.111, C:A.112, C:N.115, C:S.215, C:Q.246, C:K.272, C:K.272, A:T.303, A:T.303
- Salt bridges: C:K.272, C:R.406
NMA.12: 16 residues within 4Å:- Chain B: Y.301, T.302, T.303
- Chain D: Q.52, T.110, G.111, A.112, W.138, H.139, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
16 PLIP interactions:3 interactions with chain B, 13 interactions with chain D- Hydrophobic interactions: B:Y.301, D:Q.52, D:W.138, D:E.210
- Hydrogen bonds: B:T.303, B:T.303, D:Q.52, D:G.111, D:A.112, D:N.115, D:S.215, D:Q.246, D:K.272, D:K.272
- Salt bridges: D:K.272, D:R.406
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structures of dialkylglycine decarboxylase inhibitor complexes. J.Mol.Biol. (1999)
- Release Date
- 1999-11-19
- Peptides
- PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x NMA: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-2-METHYLALANINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structures of dialkylglycine decarboxylase inhibitor complexes. J.Mol.Biol. (1999)
- Release Date
- 1999-11-19
- Peptides
- PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A