SMTL ID : 1d8u.1

CRYSTAL STRUCTURE OF NON-SYMBIOTIC PLANT HEMOGLOBIN FROM RICE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: A.51, M.54, F.55, K.70, H.74, M.81, R.104, L.105, T.108, H.109, Y.112, V.114, H.118, F.119, V.122, Y.151, L.154, V.155 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:A.51, A:M.54, A:F.55, A:F.55, A:L.105, A:T.108, A:Y.112, A:Y.112, A:V.114, A:V.114, A:H.118, A:F.119, A:F.119, A:V.122, A:Y.151, A:V.155 Hydrogen bonds: A:T.108 Salt bridges: A:K.70, A:R.104 pi-Stacking: A:H.109, A:H.109 Metal complexes: A:H.74, A:H.109 HEM.2: 18 residues within 4Å: Chain B: M.54, F.55, K.70, H.74, V.78, M.81, R.104, L.105, T.108, H.109, Y.112, V.114, H.118, F.119, V.122, Y.151, L.154, V.155 22 PLIP interactions: 22 interactions with chain B, Hydrophobic interactions: B:F.55, B:F.55, B:V.78, B:V.78, B:L.105, B:T.108, B:Y.112, B:Y.112, B:V.114, B:V.114, B:H.118, B:F.119, B:F.119, B:V.122, B:Y.151, B:V.155 Hydrogen bonds: B:T.108, B:T.108 Salt bridges: B:K.70, B:R.104 Metal complexes: B:H.74, B:H.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hargrove, M.S. et al., Crystal structure of a nonsymbiotic plant hemoglobin. Structure Fold.Des. (2000)

Release Date

2001-01-10

Peptides

NON-SYMBIOTIC HEMOGLOBIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NON-SYMBIOTIC HEMOGLOBIN