SMTL ID : 1dci.1

DIENOYL-COA ISOMERASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-hexamer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.164 Chain B: G.164 Chain C: G.164 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: R.30, R.34 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: Q.141, K.143, K.178 Ligand excluded by PLIP SO4.8: 1 residues within 4Å: Chain B: K.59 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: Q.141, K.143, K.178 Ligand excluded by PLIP SO4.10: 1 residues within 4Å: Chain B: R.30 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain C: K.256, I.270, T.271 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain C: Q.141, K.143, K.178 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: G.164 Chain E: G.164 Chain F: G.164 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain D: R.30, R.34 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain D: Q.141, K.143, K.178 Ligand excluded by PLIP SO4.27: 1 residues within 4Å: Chain E: K.59 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain E: Q.141, K.143, K.178 Ligand excluded by PLIP SO4.29: 1 residues within 4Å: Chain E: R.30 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain F: K.256, I.270, T.271 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain F: Q.141, K.143, K.178 Ligand excluded by PLIP

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.16: 1 residues within 4Å: Chain C: E.263 No protein-ligand interaction detected (PLIP) MG.23: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.24: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.34: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.35: 1 residues within 4Å: Chain F: E.263 No protein-ligand interaction detected (PLIP)

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: I.74, I.93, D.152, V.153 Chain B: L.249 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: R.166, N.170 Chain B: D.130, L.226, I.227 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.130, A:R.166, A:N.170 Water bridges: B:A.128, B:A.128, B:C.129, B:C.129, B:D.130, B:D.130 EDO.11: 5 residues within 4Å: Chain B: I.74, I.93, D.152, V.153 Chain C: L.249 No protein-ligand interaction detected (PLIP) EDO.12: 5 residues within 4Å: Chain B: R.166, N.170 Chain C: D.130, L.226, I.227 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:C.129, C:D.130, B:R.166, B:N.170 EDO.17: 6 residues within 4Å: Chain A: L.249 Chain C: I.74, I.93, Y.96, D.152, V.153 No protein-ligand interaction detected (PLIP) EDO.18: 5 residues within 4Å: Chain A: D.130, L.226, I.227 Chain C: R.166, N.170 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:C.129, A:D.130, C:R.166, C:N.170 EDO.19: 3 residues within 4Å: Chain C: W.87, Y.88 Chain D: L.275 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Water bridges: C:W.87, C:Y.88, D:L.275, D:L.275 EDO.25: 5 residues within 4Å: Chain D: I.74, I.93, D.152, V.153 Chain E: L.249 No protein-ligand interaction detected (PLIP) EDO.26: 5 residues within 4Å: Chain D: R.166, N.170 Chain E: D.130, L.226, I.227 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain D Water bridges: E:A.128, E:A.128, E:C.129, E:C.129, E:D.130, E:D.130 Hydrogen bonds: D:R.166, D:N.170 EDO.30: 5 residues within 4Å: Chain E: I.74, I.93, D.152, V.153 Chain F: L.249 No protein-ligand interaction detected (PLIP) EDO.31: 5 residues within 4Å: Chain E: R.166, N.170 Chain F: D.130, L.226, I.227 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:C.129, E:R.166, E:N.170 EDO.36: 6 residues within 4Å: Chain D: L.249 Chain F: I.74, I.93, Y.96, D.152, V.153 No protein-ligand interaction detected (PLIP) EDO.37: 5 residues within 4Å: Chain D: D.130, L.226, I.227 Chain F: R.166, N.170 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:R.166, F:N.170, D:C.129 EDO.38: 3 residues within 4Å: Chain A: L.275 Chain F: W.87, Y.88 5 PLIP interactions: 2 interactions with chain F, 3 interactions with chain A Water bridges: F:W.87, F:Y.88, A:L.275, A:L.275 Hydrogen bonds: A:L.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., The crystal structure of dienoyl-CoA isomerase at 1.5 A resolution reveals the importance of aspartate and glutamate sidechains for catalysis. Structure (1998)

Release Date

1999-03-30

Peptides

DIENOYL-COA ISOMERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

DIENOYL-COA ISOMERASE