SMTL ID : 1dek.1

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: Y.42, Q.85, C.88, E.108 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:Y.42, A:E.108 MG.3: 4 residues within 4Å: Chain B: Y.42, Q.85, C.88, E.108 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:Y.42, B:E.108

2 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

DGP.2: 18 residues within 4Å: Chain A: K.10, L.32, A.33, I.36, K.37, R.68, R.132, M.135, G.139, T.140, V.144, W.152, D.175, R.177, Q.178, E.181, T.208, E.209 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.132, A:D.175, A:R.177, A:Q.178 Water bridges: A:K.37, A:K.37, A:K.37, A:R.68, A:R.177, A:R.177, A:R.177, A:R.177 Salt bridges: A:K.10, A:K.37, A:R.68, A:R.132, A:D.175, A:R.177, A:E.181 DGP.4: 16 residues within 4Å: Chain B: L.32, A.33, I.36, K.37, R.68, R.132, M.135, G.139, T.140, V.144, W.152, D.175, T.176, R.177, Q.178, E.181 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.132, B:R.132, B:T.140, B:D.175, B:R.177, B:Q.178 Water bridges: B:K.37, B:K.37 Salt bridges: B:K.37, B:R.68, B:R.132, B:D.175, B:E.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplyakov, A. et al., Crystal structure of bacteriophage T4 deoxynucleotide kinase with its substrates dGMP and ATP. EMBO J. (1996)

Release Date

1997-01-11

Peptides

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE

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