SMTL ID : 1dg6.1

CRYSTAL STRUCTURE OF APO2L/TRAIL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: CL.2, ZN.3, CL.4, ZN.5, CL.6 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Metal complexes: C:C.140, A:C.140, B:C.140 ZN.3: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: ZN.1, CL.2, CL.4, ZN.5, CL.6 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Metal complexes: C:C.140, A:C.140, B:C.140 ZN.5: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: ZN.1, CL.2, ZN.3, CL.4, CL.6 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Metal complexes: C:C.140, A:C.140, B:C.140

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: ZN.1, ZN.3, CL.4, ZN.5, CL.6 Ligand excluded by PLIP CL.4: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: ZN.1, CL.2, ZN.3, ZN.5, CL.6 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain A: C.140 Chain B: C.140 Chain C: C.140 Ligands: ZN.1, CL.2, ZN.3, CL.4, ZN.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hymowitz, S.G. et al., A unique zinc-binding site revealed by a high-resolution X-ray structure of homotrimeric Apo2L/TRAIL. Biochemistry (2000)

Release Date

2000-01-26

Peptides

APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL)