- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x LI: LITHIUM ION(Non-covalent)
LI.2: 5 residues within 4Å:- Chain A: L.77, F.78, V.304, S.305, D.306
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:L.77, A:D.306, H2O.2, H2O.2
LI.6: 5 residues within 4Å:- Chain B: L.77, F.78, V.304, S.305, D.306
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:L.77, B:D.306, H2O.6, H2O.6
LI.10: 5 residues within 4Å:- Chain C: L.77, F.78, V.304, S.305, D.306
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:L.77, C:D.306, H2O.10, H2O.10
LI.14: 5 residues within 4Å:- Chain D: L.77, F.78, V.304, S.305, D.306
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:L.77, D:D.306, H2O.13, H2O.14
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.3: 15 residues within 4Å:- Chain A: T.109, G.110, A.111, N.114, W.137, H.138, G.139, E.209, D.242, A.244, Q.245, K.271
- Chain B: T.301, T.302
- Ligands: MES.4
14 PLIP interactions:11 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:E.209, A:K.271
- Hydrogen bonds: A:T.109, A:G.110, A:A.111, A:N.114, A:Q.245, A:K.271, B:T.302, B:T.302
- Water bridges: A:E.209, B:H.303
- Salt bridges: A:K.271
- pi-Stacking: A:W.137
PLP.7: 15 residues within 4Å:- Chain A: T.301, T.302
- Chain B: T.109, G.110, A.111, N.114, W.137, H.138, G.139, E.209, D.242, A.244, Q.245, K.271
- Ligands: MES.8
15 PLIP interactions:4 interactions with chain A, 11 interactions with chain B- Hydrogen bonds: A:T.302, A:T.302, A:T.302, B:T.109, B:G.110, B:A.111, B:N.114, B:Q.245
- Water bridges: A:H.303, B:T.109, B:E.209
- Hydrophobic interactions: B:E.209, B:K.271
- Salt bridges: B:K.271
- pi-Stacking: B:W.137
PLP.11: 15 residues within 4Å:- Chain C: T.109, G.110, A.111, N.114, W.137, H.138, G.139, E.209, D.242, A.244, Q.245, K.271
- Chain D: T.301, T.302
- Ligands: MES.12
15 PLIP interactions:4 interactions with chain D, 11 interactions with chain C- Hydrogen bonds: D:T.302, D:T.302, D:T.302, C:T.109, C:G.110, C:A.111, C:N.114, C:Q.245
- Water bridges: D:H.303, C:T.109, C:E.209
- Hydrophobic interactions: C:E.209, C:K.271
- Salt bridges: C:K.271
- pi-Stacking: C:W.137
PLP.15: 15 residues within 4Å:- Chain C: T.301, T.302
- Chain D: T.109, G.110, A.111, N.114, W.137, H.138, G.139, E.209, D.242, A.244, Q.245, K.271
- Ligands: MES.16
14 PLIP interactions:11 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:E.209, D:K.271
- Hydrogen bonds: D:T.109, D:G.110, D:A.111, D:N.114, D:Q.245, D:K.271, C:T.302, C:T.302
- Water bridges: D:E.209, C:H.303
- Salt bridges: D:K.271
- pi-Stacking: D:W.137
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.4: 10 residues within 4Å:- Chain A: Q.51, W.137, S.150, A.151, S.214, Q.245, K.271, R.405
- Chain B: Y.300
- Ligands: PLP.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.51, A:S.214, A:Q.245
- Water bridges: A:S.214
- Salt bridges: A:K.271, A:R.405
MES.8: 10 residues within 4Å:- Chain A: Y.300
- Chain B: Q.51, W.137, S.150, A.151, S.214, Q.245, K.271, R.405
- Ligands: PLP.7
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.51, B:S.214, B:Q.245
- Water bridges: B:S.214
- Salt bridges: B:K.271, B:R.405
MES.12: 10 residues within 4Å:- Chain C: Q.51, W.137, S.150, A.151, S.214, Q.245, K.271, R.405
- Chain D: Y.300
- Ligands: PLP.11
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Q.51, C:S.214, C:Q.245
- Water bridges: C:S.214
- Salt bridges: C:K.271, C:R.405
MES.16: 10 residues within 4Å:- Chain C: Y.300
- Chain D: Q.51, W.137, S.150, A.151, S.214, Q.245, K.271, R.405
- Ligands: PLP.15
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:Q.51, D:S.214, D:Q.245
- Water bridges: D:S.214
- Salt bridges: D:K.271, D:R.405
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hohenester, E. et al., An alkali metal ion size-dependent switch in the active site structure of dialkylglycine decarboxylase. Biochemistry (1994)
- Release Date
- 1994-09-30
- Peptides
- DIALKYLGLYCINE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x LI: LITHIUM ION(Non-covalent)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hohenester, E. et al., An alkali metal ion size-dependent switch in the active site structure of dialkylglycine decarboxylase. Biochemistry (1994)
- Release Date
- 1994-09-30
- Peptides
- DIALKYLGLYCINE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A