- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 27 residues within 4Å:- Chain A: R.68, V.69, V.70, H.71, R.108, G.127, F.128, V.142, G.143, N.144, F.149, P.154, F.157, G.212, S.213, H.214, L.295, F.330, M.346, R.350, A.353, Y.354, T.357, H.358, R.361
- Chain C: M.57, D.61
30 PLIP interactions:30 interactions with chain A,- Hydrophobic interactions: A:V.69, A:V.70, A:H.71, A:V.142, A:N.144, A:F.149, A:P.154, A:F.157, A:F.157, A:F.157, A:F.157, A:L.295, A:F.330, A:R.350, A:A.353, A:Y.354, A:Y.354
- Water bridges: A:V.69, A:I.328, A:T.357
- Salt bridges: A:R.68, A:R.68, A:R.108, A:H.358, A:R.361
- pi-Stacking: A:H.71, A:F.157
- pi-Cation interactions: A:R.350, A:R.350
- Metal complexes: A:Y.354
HEM.5: 26 residues within 4Å:- Chain B: R.68, V.69, V.70, H.71, R.108, G.127, F.128, V.142, G.143, N.144, P.154, F.157, G.212, S.213, H.214, L.295, F.330, M.346, R.350, A.353, Y.354, T.357, H.358, R.361
- Chain D: M.57, D.61
28 PLIP interactions:28 interactions with chain B,- Hydrophobic interactions: B:V.69, B:V.70, B:H.71, B:V.142, B:N.144, B:P.154, B:F.157, B:F.157, B:F.157, B:F.157, B:L.295, B:F.330, B:R.350, B:A.353, B:Y.354, B:Y.354
- Water bridges: B:V.69, B:I.328, B:T.357
- Salt bridges: B:R.68, B:R.68, B:R.108, B:H.358, B:R.361
- pi-Stacking: B:H.71, B:F.157
- pi-Cation interactions: B:R.350
- Metal complexes: B:Y.354
HEM.7: 27 residues within 4Å:- Chain A: M.57, D.61
- Chain C: R.68, V.69, V.70, H.71, R.108, G.127, F.128, V.142, G.143, N.144, F.149, P.154, F.157, G.212, S.213, H.214, L.295, F.330, M.346, R.350, A.353, Y.354, T.357, H.358, R.361
30 PLIP interactions:30 interactions with chain C,- Hydrophobic interactions: C:V.69, C:V.70, C:H.71, C:V.142, C:N.144, C:F.149, C:P.154, C:F.157, C:F.157, C:F.157, C:F.157, C:L.295, C:F.330, C:R.350, C:A.353, C:Y.354, C:Y.354
- Water bridges: C:V.69, C:A.129, C:I.328, C:T.357
- Salt bridges: C:R.68, C:R.68, C:R.108, C:H.358, C:R.361
- pi-Stacking: C:H.71, C:F.157
- pi-Cation interactions: C:R.350
- Metal complexes: C:Y.354
HEM.10: 27 residues within 4Å:- Chain B: M.57, D.61
- Chain D: R.68, V.69, V.70, H.71, R.108, G.127, F.128, V.142, G.143, N.144, F.149, P.154, F.157, G.212, S.213, H.214, L.295, F.330, M.346, R.350, A.353, Y.354, T.357, H.358, R.361
29 PLIP interactions:29 interactions with chain D,- Hydrophobic interactions: D:V.69, D:V.70, D:H.71, D:V.142, D:N.144, D:F.149, D:P.154, D:F.157, D:F.157, D:F.157, D:F.157, D:L.295, D:F.330, D:R.350, D:A.353, D:Y.354, D:Y.354
- Water bridges: D:I.328, D:T.357, D:T.357
- Salt bridges: D:R.68, D:R.68, D:R.108, D:H.358, D:R.361
- pi-Stacking: D:H.71, D:F.157
- pi-Cation interactions: D:R.350
- Metal complexes: D:Y.354
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.3: 16 residues within 4Å:- Chain A: P.147, H.190, F.194, S.197, R.199, N.209, H.231, K.233, V.298, W.299, P.300, H.301, Q.438, A.441, F.442, V.446
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:P.147
- Hydrogen bonds: A:H.190, A:S.197, A:S.197, A:R.199, A:N.209, A:W.299, A:H.301
- Water bridges: A:D.198, A:Y.211, A:Y.211, A:Q.278, A:W.299, A:K.302
- Salt bridges: A:R.199, A:K.233, A:H.301, A:H.301
- pi-Stacking: A:F.442
- pi-Cation interactions: A:R.199
NDP.8: 17 residues within 4Å:- Chain C: P.147, H.190, F.194, S.197, R.199, N.209, H.231, K.233, V.298, W.299, P.300, H.301, K.302, Q.438, A.441, F.442, V.446
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:P.147
- Hydrogen bonds: C:H.190, C:S.197, C:S.197, C:R.199, C:N.209, C:W.299, C:H.301
- Water bridges: C:D.198, C:R.199, C:Y.211, C:Y.211, C:W.299
- Salt bridges: C:R.199, C:K.233, C:H.301, C:H.301, C:K.302, C:K.302
- pi-Stacking: C:F.442
- pi-Cation interactions: C:R.199
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Putnam, C.D. et al., Active and inhibited human catalase structures: ligand and NADPH binding and catalytic mechanism. J.Mol.Biol. (2000)
- Release Date
- 2000-02-11
- Peptides
- CATALASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Putnam, C.D. et al., Active and inhibited human catalase structures: ligand and NADPH binding and catalytic mechanism. J.Mol.Biol. (2000)
- Release Date
- 2000-02-11
- Peptides
- CATALASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D