SMTL ID : 1dgr.1

Refined crystal structure of canavalin from jack bean

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain B: N.39, F.49, H.52, N.54, V.59 Chain C: I.18, R.46 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.39, B:N.54 Salt bridges: B:H.52, C:R.46 PO4.2: 6 residues within 4Å: Chain E: F.49, H.52, N.54 Chain F: I.18, V.24, R.46 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain E Salt bridges: F:R.46, E:H.52 Hydrogen bonds: E:N.39, E:N.54 PO4.3: 6 residues within 4Å: Chain H: N.39, F.49, H.52, N.54 Chain I: I.18, R.46 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain I Hydrogen bonds: H:N.39, H:N.54 Salt bridges: H:H.52, I:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ko, T.P. et al., X-ray diffraction and atomic force microscopy analysis of twinned crystals: rhombohedral canavalin. Acta Crystallogr.,Sect.D (2001)

Release Date

1999-12-29

Peptides

CANAVALIN: ADG
CANAVALIN: BEH
CANAVALIN: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

G
C

B
X

E
V

H
N

C
Y

F
W

I
M

CANAVALIN

CANAVALIN

CANAVALIN

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