SMTL ID : 1dgs.2 (1 other biounit)

CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.406, C.409, C.422, C.427 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.406, A:C.409, A:C.422, A:C.427

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.2: 11 residues within 4Å: Chain A: S.84, L.85, E.114, H.115, K.116, V.117, L.120, E.169, R.196, Y.221, K.312 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:L.85, A:E.114, A:V.117, A:R.196 Water bridges: A:N.87, A:K.116 Salt bridges: A:K.116, A:K.312 pi-Stacking: A:Y.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.Y. et al., Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J. (2000)

Release Date

2000-11-27

Peptides

DNA LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA LIGASE

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