SMTL ID : 1dhs.1

CRYSTAL STRUCTURE OF THE NAD COMPLEX OF HUMAN DEOXYHYPUSINE SYNTHASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: T.96, S.97, N.98, L.99, S.101, T.123, A.124, G.125, E.128, E.129, I.158, D.230, G.274, G.275, I.298, N.299, T.300, A.301, A.333, D.334, A.335 Chain D: G.276, V.277, H.280, D.305, S.307, D.308, S.309 Ligands: NAD.4 21 PLIP interactions: 18 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:T.96, A:S.97, A:S.97, A:N.98, A:N.98, A:N.98, A:S.101, A:T.123, A:T.123, A:G.125, A:E.129, A:D.230, A:G.275, A:T.300, A:T.300, A:D.334, A:A.335, D:D.308, D:S.309 Water bridges: A:A.124, D:G.276 NAD.2: 29 residues within 4Å: Chain B: T.96, S.97, N.98, L.99, S.101, T.123, A.124, G.125, E.128, E.129, I.158, D.230, G.274, G.275, I.298, N.299, T.300, A.301, A.333, D.334, A.335 Chain C: G.276, V.277, H.280, D.305, S.307, D.308, S.309 Ligands: NAD.3 21 PLIP interactions: 3 interactions with chain C, 18 interactions with chain B Hydrogen bonds: C:D.308, C:S.309, B:T.96, B:S.97, B:S.97, B:N.98, B:N.98, B:N.98, B:S.101, B:T.123, B:T.123, B:G.125, B:E.129, B:D.230, B:G.275, B:T.300, B:T.300, B:D.334, B:A.335 Water bridges: C:G.276, B:A.124 NAD.3: 29 residues within 4Å: Chain B: G.276, V.277, H.280, D.305, S.307, D.308, S.309 Chain C: T.96, S.97, N.98, L.99, S.101, T.123, A.124, G.125, E.128, E.129, I.158, D.230, G.274, G.275, I.298, N.299, T.300, A.301, A.333, D.334, A.335 Ligands: NAD.2 16 PLIP interactions: 13 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.97, C:S.97, C:N.98, C:N.98, C:N.98, C:S.101, C:T.123, C:G.125, C:E.129, C:G.275, C:T.300, C:A.335, B:D.308, B:S.309 Water bridges: C:A.124, B:D.308 NAD.4: 29 residues within 4Å: Chain A: G.276, V.277, H.280, D.305, S.307, D.308, S.309 Chain D: T.96, S.97, N.98, L.99, S.101, T.123, A.124, G.125, E.128, E.129, I.158, D.230, G.274, G.275, I.298, N.299, T.300, A.301, A.333, D.334, A.335 Ligands: NAD.1 16 PLIP interactions: 3 interactions with chain A, 13 interactions with chain D Hydrogen bonds: A:D.308, A:S.309, D:S.97, D:S.97, D:N.98, D:N.98, D:N.98, D:S.101, D:T.123, D:G.125, D:E.129, D:G.275, D:T.300, D:A.335 Water bridges: A:D.308, D:A.124

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Liao, D.I. et al., Crystal structure of the NAD complex of human deoxyhypusine synthase: an enzyme with a ball-and-chain mechanism for blocking the active site. Structure (1998)

Release Date

1998-02-25

Peptides

DEOXYHYPUSINE SYNTHASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

DEOXYHYPUSINE SYNTHASE