SMTL ID : 1di0.1 (1 other biounit)

CRYSTAL STRUCTURE OF LUMAZINE SYNTHASE FROM BRUCELLA ABORTUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-pentamer

Ligands

13 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: G.53, A.54, Y.55, E.56, V.90 Ligands: PO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.54, A:Y.55, A:E.56 PO4.2: 4 residues within 4Å: Chain A: H.87 Chain E: L.114, K.136 Ligands: PO4.1 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A Water bridges: E:K.136, E:K.136 Salt bridges: E:K.136, A:H.87 PO4.3: 5 residues within 4Å: Chain A: G.82, G.83, I.84, Y.85, H.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.84, A:Y.85, A:Y.85 Salt bridges: A:H.87 PO4.4: 6 residues within 4Å: Chain B: W.20, G.53, A.54, Y.55, F.78 Ligands: PO4.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.54, B:Y.55 Water bridges: B:F.78 PO4.5: 4 residues within 4Å: Chain A: L.114, K.136 Chain B: H.87 Ligands: PO4.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:K.136, B:H.87 Salt bridges: A:K.136, B:H.87 PO4.6: 5 residues within 4Å: Chain B: G.82, G.83, I.84, Y.85, H.87 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.82, B:I.84, B:Y.85 Salt bridges: B:H.87 PO4.7: 5 residues within 4Å: Chain C: G.53, A.54, Y.55, E.56, V.90 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.54, C:Y.55 PO4.8: 5 residues within 4Å: Chain C: G.82, G.83, I.84, Y.85, H.87 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:I.84, C:Y.85, C:Y.85 Salt bridges: C:H.87 PO4.9: 4 residues within 4Å: Chain D: G.53, A.54, Y.55, E.56 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:A.54, D:Y.55, D:E.56, D:E.56 PO4.10: 5 residues within 4Å: Chain D: G.82, G.83, I.84, Y.85, H.87 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:I.84, D:Y.85 Salt bridges: D:H.87 PO4.11: 4 residues within 4Å: Chain E: G.53, A.54, Y.55, E.56 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Y.55 PO4.12: 5 residues within 4Å: Chain D: L.114, K.136 Chain E: D.86, H.87, V.90 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:D.86 Salt bridges: E:H.87, D:K.136 PO4.13: 5 residues within 4Å: Chain E: G.82, G.83, I.84, Y.85, H.87 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:I.84, E:Y.85 Salt bridges: E:H.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braden, B.C. et al., Divergence in macromolecular assembly: X-ray crystallographic structure analysis of lumazine synthase from Brucella abortus. J.Mol.Biol. (2000)

Release Date

2000-04-24

Peptides

LUMAZINE SYNTHASE: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

LUMAZINE SYNTHASE

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