SMTL ID : 1djn.1

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT WILD TYPE TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 13 residues within 4Å: Chain A: R.322, I.325, A.326, C.345, I.346, G.347, C.348, N.349, C.351, I.363, C.364, T.365, Q.366 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.345, A:C.348, A:C.351, A:C.364 SF4.4: 13 residues within 4Å: Chain B: R.322, I.325, A.326, C.345, I.346, G.347, C.348, N.349, C.351, I.363, C.364, T.365, Q.366 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.345, B:C.348, B:C.351, B:C.364

2 x FMN: FLAVIN MONONUCLEOTIDE(Covalent)

FMN.2: 22 residues within 4Å: Chain A: V.27, P.28, H.29, C.30, E.59, Y.60, E.103, Y.169, H.172, R.222, W.264, D.267, A.268, V.297, G.298, R.299, C.320, A.321, R.322, P.323, I.325, I.352 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:H.29, A:W.264, A:W.264, A:R.322, A:I.325, A:I.352 Hydrogen bonds: A:P.28, A:C.30, A:Y.60, A:E.103, A:Y.169, A:H.172, A:R.222, A:R.222, A:G.298, A:R.299, A:A.321, A:R.322 Water bridges: A:Y.300, A:G.319, A:R.322 Salt bridges: A:R.322 pi-Stacking: A:W.264 FMN.5: 21 residues within 4Å: Chain B: V.27, P.28, H.29, C.30, E.59, Y.60, E.103, Y.169, H.172, R.222, W.264, D.267, A.268, V.297, G.298, R.299, C.320, A.321, R.322, P.323, I.352 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:H.29, B:W.264, B:W.264, B:R.322, B:I.352 Hydrogen bonds: B:P.28, B:C.30, B:Y.60, B:E.103, B:H.172, B:R.222, B:R.222, B:G.298, B:R.299, B:A.321, B:R.322 Water bridges: B:Y.300, B:G.319, B:R.322 Salt bridges: B:R.322

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 18 residues within 4Å: Chain A: V.395, G.396, G.398, P.399, S.400, D.419, T.420, G.426, H.427, P.469, M.470, A.486, T.487, G.488, A.489, G.673, D.674, A.684 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.398, A:S.400, A:S.400, A:S.400, A:T.420, A:H.427, A:M.470, A:M.470, A:A.489, A:D.674 Water bridges: A:A.397, A:G.401, A:G.426, A:H.427, A:G.488, A:D.674, A:D.674, A:A.675 Salt bridges: A:H.427, A:H.427 ADP.6: 18 residues within 4Å: Chain B: V.395, G.396, G.398, P.399, S.400, D.419, T.420, G.426, H.427, P.469, M.470, A.486, T.487, G.488, A.489, G.673, D.674, A.684 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.398, B:S.400, B:S.400, B:T.420, B:H.427, B:M.470, B:M.470, B:A.489, B:D.674, B:D.674 Water bridges: B:A.397, B:S.400, B:G.401, B:G.426, B:H.427, B:G.488, B:R.644, B:D.674 Salt bridges: B:H.427, B:H.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trickey, P. et al., Structural and biochemical characterization of recombinant wild type and a C30A mutant of trimethylamine dehydrogenase from methylophilus methylotrophus (sp. W(3)A(1)). Biochemistry (2000)

Release Date

1999-12-22

Peptides

TRIMETHYLAMINE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRIMETHYLAMINE DEHYDROGENASE

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