SMTL ID : 1dkr.1

CRYSTAL STRUCTURES OF BACILLUS SUBTILIS PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE: MOLECULAR BASIS OF ALLOSTERIC INHIBITION AND ACTIVATION.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.228, T.229, A.230, G.231, T.232 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.228, A:T.229, A:T.229, A:A.230, A:G.231, A:T.232, A:T.232 Water bridges: A:I.233 SO4.2: 7 residues within 4Å: Chain A: Q.310, S.311, V.312, S.313 Chain B: R.110 Chain E: S.53, R.55 8 PLIP interactions: 3 interactions with chain A, 4 interactions with chain E, 1 interactions with chain B Hydrogen bonds: A:V.312, A:S.313, E:S.53 Water bridges: A:D.149, E:R.55, E:R.55 Salt bridges: E:R.55, B:R.110 SO4.3: 6 residues within 4Å: Chain B: I.227, D.228, T.229, A.230, G.231, T.232 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.228, B:T.229, B:T.229, B:A.230, B:G.231, B:T.232, B:T.232 Water bridges: B:R.102, B:R.102, B:D.224, B:T.232, B:I.233 SO4.4: 7 residues within 4Å: Chain A: R.110 Chain B: Q.310, S.311, V.312, S.313 Chain D: S.53, R.55 8 PLIP interactions: 3 interactions with chain D, 4 interactions with chain B, 1 interactions with chain A Water bridges: D:R.55, D:R.55, B:D.149 Salt bridges: D:R.55, A:R.110 Hydrogen bonds: B:S.311, B:V.312, B:S.313 SO4.5: 5 residues within 4Å: Chain C: D.228, T.229, A.230, G.231, T.232 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.228, C:T.229, C:T.229, C:A.230, C:G.231, C:T.232, C:T.232 Water bridges: C:I.233 SO4.6: 7 residues within 4Å: Chain A: S.53, R.55 Chain C: Q.310, S.311, V.312, S.313 Chain D: R.110 8 PLIP interactions: 1 interactions with chain D, 3 interactions with chain C, 4 interactions with chain A Salt bridges: D:R.110, A:R.55 Hydrogen bonds: C:V.312, C:S.313, A:S.53 Water bridges: C:D.149, A:R.55, A:R.55 SO4.7: 6 residues within 4Å: Chain D: I.227, D.228, T.229, A.230, G.231, T.232 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:D.228, D:T.229, D:T.229, D:A.230, D:G.231, D:T.232, D:T.232 Water bridges: D:R.102, D:R.102, D:D.224, D:T.232, D:I.233 SO4.8: 7 residues within 4Å: Chain C: R.110 Chain D: Q.310, S.311, V.312, S.313 Chain F: S.53, R.55 8 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C, 3 interactions with chain F Hydrogen bonds: D:S.311, D:V.312, D:S.313 Water bridges: D:D.149, F:R.55, F:R.55 Salt bridges: C:R.110, F:R.55 SO4.9: 5 residues within 4Å: Chain E: D.228, T.229, A.230, G.231, T.232 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:D.228, E:T.229, E:T.229, E:A.230, E:G.231, E:T.232, E:T.232 Water bridges: E:I.233 SO4.10: 7 residues within 4Å: Chain C: S.53, R.55 Chain E: Q.310, S.311, V.312, S.313 Chain F: R.110 8 PLIP interactions: 4 interactions with chain C, 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: C:S.53, E:V.312, E:S.313 Water bridges: C:R.55, C:R.55, E:D.149 Salt bridges: C:R.55, F:R.110 SO4.11: 6 residues within 4Å: Chain F: I.227, D.228, T.229, A.230, G.231, T.232 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:D.228, F:T.229, F:T.229, F:A.230, F:G.231, F:T.232, F:T.232 Water bridges: F:R.102, F:R.102, F:D.224, F:T.232, F:I.233 SO4.12: 7 residues within 4Å: Chain B: S.53, R.55 Chain E: R.110 Chain F: Q.310, S.311, V.312, S.313 8 PLIP interactions: 3 interactions with chain B, 4 interactions with chain F, 1 interactions with chain E Water bridges: B:R.55, B:R.55, F:D.149 Salt bridges: B:R.55, E:R.110 Hydrogen bonds: F:S.311, F:V.312, F:S.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eriksen, T.A. et al., Structural basis for the function of Bacillus subtilis phosphoribosyl-pyrophosphate synthetase. Nat.Struct.Biol. (2000)

Release Date

2000-04-05

Peptides

PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE

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