SMTL ID : 1dky.3 (2 other biounits)

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ARG- LEU- LEU- LEU: PEPTIDE SUBSTRATE(Non-covalent)

ARG-LEU-LEU-LEU.1: 10 residues within 4Å: Chain A: I.13, T.15, M.16, F.38, S.39, T.40, A.41, Q.45, V.48, S.49 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.13, A:T.15, A:F.38, A:V.48 Hydrogen bonds: A:M.16, A:S.39, A:S.39, A:A.41, A:Q.45, A:S.49 ARG-LEU-LEU-LEU.2: 10 residues within 4Å: Chain B: I.13, T.15, M.16, F.38, S.39, T.40, A.41, Q.45, V.48, S.49 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.13, B:T.15, B:F.38, B:F.38 Hydrogen bonds: B:M.16, B:S.39, B:S.39, B:A.41, B:Q.45, B:S.49 Water bridges: B:T.15, B:T.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Structural analysis of substrate binding by the molecular chaperone DnaK. Science (1996)

Release Date

1996-12-07

Peptides

DNAK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNAK

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