- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.4: 28 residues within 4Å:- Chain A: G.7, S.8, G.9, Y.10, V.11, V.28, D.29, I.30, L.31, K.34, A.80, T.81, P.82, T.83, H.96, T.99, V.100, S.117, T.118, E.141, L.143, E.145, Y.259, C.260, K.263, R.327
- Ligands: UDX.5, GOL.7
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:V.11, A:E.141, A:L.143
- Hydrogen bonds: A:S.8, A:Y.10, A:V.11, A:I.30, A:K.34, A:T.81, A:T.83, A:H.96, A:T.118, A:E.145, A:K.263, A:K.263, A:R.327
- Water bridges: A:G.9, A:G.9, A:E.103, A:T.118, A:C.260
- Salt bridges: A:K.34, A:R.327, A:R.327
NAD.12: 28 residues within 4Å:- Chain B: G.7, S.8, G.9, Y.10, V.11, V.28, D.29, I.30, L.31, K.34, A.80, T.81, P.82, T.83, H.96, T.99, V.100, S.117, T.118, E.141, L.143, E.145, Y.259, C.260, K.263, R.327
- Ligands: UDX.13, GOL.15
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:V.11, B:E.141, B:L.143
- Hydrogen bonds: B:S.8, B:Y.10, B:V.11, B:I.30, B:K.34, B:T.81, B:T.83, B:T.118, B:E.145, B:E.145, B:K.263, B:K.263, B:R.327
- Water bridges: B:G.9, B:G.9, B:E.103, B:C.260
- Salt bridges: B:K.34, B:R.327, B:R.327
- 2 x UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE(Non-covalent)
UDX.5: 23 residues within 4Å:- Chain A: E.141, F.142, L.143, R.144, E.145, K.204, N.208, L.211, V.215, Y.249, N.250, N.251, S.253, Y.256, G.257, C.260, L.261, M.319, K.320, R.381, D.402
- Chain B: R.244
- Ligands: NAD.4
26 PLIP interactions:24 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:V.215, A:D.402
- Hydrogen bonds: A:F.142, A:E.145, A:N.251, A:N.251, A:S.253, A:G.257, A:G.257, A:M.319, A:R.381, B:R.244, B:R.244
- Water bridges: A:E.145, A:K.204, A:K.204, A:N.208, A:N.250, A:C.260, A:C.260, A:L.261, A:N.380, A:N.380
- Salt bridges: A:K.320, A:K.320
- pi-Stacking: A:Y.249
UDX.13: 23 residues within 4Å:- Chain A: R.244
- Chain B: E.141, F.142, L.143, R.144, E.145, K.204, N.208, L.211, V.215, Y.249, N.250, N.251, S.253, Y.256, G.257, C.260, L.261, M.319, K.320, R.381, D.402
- Ligands: NAD.12
28 PLIP interactions:26 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.215, B:D.402
- Hydrogen bonds: B:F.142, B:E.145, B:Y.249, B:N.251, B:N.251, B:S.253, B:G.257, B:G.257, B:M.319, B:R.381, B:D.402, A:R.244, A:R.244
- Water bridges: B:E.145, B:K.204, B:K.204, B:N.208, B:N.250, B:C.260, B:C.260, B:L.261, B:N.380, B:N.380
- Salt bridges: B:K.320, B:K.320
- pi-Stacking: B:Y.249
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 2 residues within 4Å:- Chain A: P.276, Q.277
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.277
- Water bridges: A:Q.277
GOL.7: 6 residues within 4Å:- Chain A: P.82, N.84, Y.259, R.327
- Ligands: SO4.3, NAD.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.327
- Water bridges: A:R.327
GOL.8: 5 residues within 4Å:- Chain A: F.142, R.144, P.155, S.156
- Chain B: R.244
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.144, A:S.156, A:S.156
- Water bridges: A:R.144, A:R.144, A:D.151
GOL.14: 2 residues within 4Å:- Chain B: P.276, Q.277
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.277
- Water bridges: B:Q.277
GOL.15: 6 residues within 4Å:- Chain B: P.82, N.84, Y.259, R.327
- Ligands: SO4.11, NAD.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.327
- Water bridges: B:R.327
GOL.16: 5 residues within 4Å:- Chain A: R.244
- Chain B: F.142, R.144, P.155, S.156
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.144, B:S.156, B:S.156
- Water bridges: B:R.144, B:R.144, B:D.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, R.E. et al., The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation. Biochemistry (2000)
- Release Date
- 2000-05-31
- Peptides
- UDP-GLUCOSE DEHYDROGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, R.E. et al., The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation. Biochemistry (2000)
- Release Date
- 2000-05-31
- Peptides
- UDP-GLUCOSE DEHYDROGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A