SMTL ID : 1dll.1

The HC fragement of tetanus toxin complexed with lactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 8 residues within 4Å: Chain A: N.346, D.348, T.396, H.397, S.413, W.415, Y.416 Ligands: GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.346, A:N.346, A:D.348, A:S.413 Water bridges: A:N.346, A:D.348, A:T.396, A:N.398, A:N.398, A:Y.416, A:G.426

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.346, D.348, T.396, S.413, W.415, Y.416 Ligands: BGC-GAL.1, BGC-GAL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.346, A:S.413, A:S.413 Water bridges: A:T.396, A:Y.416 GOL.3: 3 residues within 4Å: Chain A: G.341, N.342, R.352 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.342, A:R.352, A:R.352 Water bridges: A:D.340, A:Y.355 GOL.4: 4 residues within 4Å: Chain A: N.75, C.219, K.220, A.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.221, A:A.221 Water bridges: A:N.75, A:N.75, A:C.219 GOL.5: 7 residues within 4Å: Chain A: Y.250, R.305, Y.306, T.307, N.309, D.320, F.321 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.250, A:Y.306, A:N.309, A:F.321 Water bridges: A:T.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Emsley, P. et al., The structures of the H(C) fragment of tetanus toxin with carbohydrate subunit complexes provide insight into ganglioside binding. J.Biol.Chem. (2000)

Release Date

2000-03-24

Peptides

TETANUS TOXIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TETANUS TOXIN

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