SMTL ID : 1dn2.1

FC FRAGMENT OF HUMAN IGG1 IN COMPLEX WITH AN ENGINEERED 13 RESIDUE PEPTIDE DCAWHLGELVWCT-NH2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.1: 13 residues within 4Å: Chain A: F.5, F.7, P.8, P.9, K.10, E.22, T.24, V.28, D.29, Q.59, N.61, T.63, R.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.7, A:K.10, A:K.10, A:D.13, A:E.22, A:E.22, A:T.24, A:K.10

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.2: 13 residues within 4Å: Chain C: F.5, F.7, P.8, P.9, K.10, E.22, T.24, V.28, D.29, Q.59, N.61, T.63, R.65 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.7, C:K.10, C:K.10, C:E.22, C:E.22, C:T.24, C:K.10 Water bridges: C:D.13, C:E.22, C:R.65, C:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeLano, W.L. et al., Convergent solutions to binding at a protein-protein interface. Science (2000)

Release Date

2000-05-17

Peptides

IMMUNOGLOBULIN LAMBDA HEAVY CHAIN: AC
ENGINEERED PEPTIDE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
E

D
F

IMMUNOGLOBULIN LAMBDA HEAVY CHAIN

ENGINEERED PEPTIDE