SMTL ID : 1doa.1 (1 other biounit)

Structure of the rho family gtp-binding protein cdc42 in complex with the multifunctional regulator rhogdi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-oligomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: T.20, T.38, D.60, T.61 Ligands: GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.20, A:T.38, H2O.1, H2O.37 MG.2: 1 residues within 4Å: Chain A: H.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.3, H2O.8

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 16 residues within 4Å: Chain A: D.14, G.15, A.16, V.17, G.18, K.19, T.20, C.21, F.31, V.36, Q.119, D.121, S.161, A.162, L.163 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:A.16, A:V.17, A:G.18, A:K.19, A:T.20, A:T.20, A:C.21, A:A.162, A:L.163 Water bridges: A:P.37 Salt bridges: A:K.19, A:D.121 pi-Stacking: A:F.31, A:F.31

1 x GER: GERAN-8-YL GERAN(Covalent)

GER.4: 13 residues within 4Å: Chain A: R.189, C.191 Chain B: I.29, L.90, L.92, Y.125, Q.145, T.147, D.155, A.186, Y.190, W.209, L.211 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.29, B:L.90, B:L.92, B:Y.125, B:T.147, B:A.186, B:Y.190, B:W.209, B:L.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffman, G.R. et al., Structure of the Rho family GTP-binding protein Cdc42 in complex with the multifunctional regulator RhoGDI. Cell(Cambridge,Mass.) (2000)

Release Date

2000-02-09

Peptides

PROTEIN (GTP-BINDING PROTEIN): A
PROTEIN (GDP-DISSOCIATION INHIBITOR 1): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (GTP-BINDING PROTEIN)

PROTEIN (GDP-DISSOCIATION INHIBITOR 1)

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