SMTL ID : 1dot.1

CRYSTALLOGRAPHIC STRUCTURE OF DUCK OVOTRANSFERRIN AT 2.3 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 6 residues within 4Å: Chain A: G.469, L.470, N.473, S.664, S.667 Ligands: NAG.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.470 Hydrogen bonds: A:G.469, A:N.473, A:N.473, A:S.667 NAG.2: 3 residues within 4Å: Chain A: A.663 Ligands: NAG.1, FUC.3 No protein-ligand interaction detected (PLIP)

1 x FUC: alpha-L-fucopyranose(Non-functional Binders)

FUC.3: 1 residues within 4Å: Ligands: NAG.2 No protein-ligand interaction detected (PLIP)

2 x FE: FE (III) ION(Non-covalent)

FE.4: 5 residues within 4Å: Chain A: D.60, Y.92, Y.191, H.250 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.60, A:Y.92, A:Y.191, A:H.250 FE.5: 5 residues within 4Å: Chain A: D.395, Y.431, Y.524, H.592 Ligands: CO3.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.431, A:Y.524, A:H.592

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 9 residues within 4Å: Chain A: D.60, Y.92, T.117, R.121, A.123, G.124, Y.191, H.250 Ligands: FE.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.117, A:R.121 CO3.7: 10 residues within 4Å: Chain A: D.395, Y.431, T.456, R.460, T.461, A.462, G.463, Y.524, H.592 Ligands: FE.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.456, A:A.462, A:G.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rawas, A. et al., Structure of diferric duck ovotransferrin at 2.35 A resolution. Acta Crystallogr.,Sect.D (1996)

Release Date

1996-03-08

Peptides

DUCK OVOTRANSFERRIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DUCK OVOTRANSFERRIN

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