SMTL ID : 1dp7.1

COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain B: T.56 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain B: V.2, S.49, V.50, M.52 No protein-ligand interaction detected (PLIP) EDO.4: 1 residues within 4Å: Chain D: T.56 1 PLIP interactions: 1 interactions with chain D Water bridges: D:T.56 EDO.5: 4 residues within 4Å: Chain D: V.2, S.49, V.50, M.52 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain B: M.52, G.53, L.54, R.55 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.54 PEG.6: 4 residues within 4Å: Chain D: M.52, G.53, L.54, R.55 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:L.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gajiwala, K.S. et al., Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding. Nature (2000)

Release Date

2000-03-06

Peptides

MHC CLASS II TRANSCRIPTION FACTOR HRFX1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
P

D
P

MHC CLASS II TRANSCRIPTION FACTOR HRFX1