- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APG: ATROLACTIC ACID (2-PHENYL-LACTIC ACID)(Non-covalent)
APG.2: 12 residues within 4Å:- Chain A: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.1
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.52, A:Y.54, A:K.166
- Hydrogen bonds: A:S.139, A:D.195, A:E.247, A:Q.317
- Water bridges: A:N.248
- Salt bridges: A:K.164, A:K.166, A:H.297
- pi-Stacking: A:H.297
APG.4: 12 residues within 4Å:- Chain B: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.3
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:F.52, B:Y.54, B:K.166
- Hydrogen bonds: B:S.139, B:D.195, B:E.247, B:Q.317
- Water bridges: B:N.248
- Salt bridges: B:K.164, B:K.166, B:H.297
- pi-Stacking: B:H.297
APG.6: 12 residues within 4Å:- Chain C: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.5
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:F.52, C:Y.54, C:K.166
- Hydrogen bonds: C:S.139, C:D.195, C:E.247, C:Q.317
- Water bridges: C:N.248
- Salt bridges: C:K.164, C:K.166, C:H.297
- pi-Stacking: C:H.297
APG.8: 12 residues within 4Å:- Chain D: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.7
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:F.52, D:Y.54, D:K.166
- Hydrogen bonds: D:S.139, D:D.195, D:E.247, D:Q.317
- Water bridges: D:N.248
- Salt bridges: D:K.164, D:K.166, D:H.297
- pi-Stacking: D:H.297
APG.10: 12 residues within 4Å:- Chain E: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.9
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:F.52, E:Y.54, E:K.166
- Hydrogen bonds: E:S.139, E:E.247, E:Q.317
- Salt bridges: E:K.164, E:K.166, E:H.297
- pi-Stacking: E:H.297
APG.12: 12 residues within 4Å:- Chain F: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.11
10 PLIP interactions:10 interactions with chain F- Hydrophobic interactions: F:F.52, F:Y.54, F:K.166
- Hydrogen bonds: F:S.139, F:E.247, F:Q.317
- Salt bridges: F:K.164, F:K.166, F:H.297
- pi-Stacking: F:H.297
APG.14: 12 residues within 4Å:- Chain G: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.13
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:F.52, G:Y.54, G:K.166
- Hydrogen bonds: G:S.139, G:E.247, G:Q.317
- Salt bridges: G:K.164, G:K.166, G:H.297
- pi-Stacking: G:H.297
APG.16: 12 residues within 4Å:- Chain H: F.52, Y.54, S.139, K.164, K.166, D.195, N.197, E.221, E.247, H.297, Q.317
- Ligands: MG.15
11 PLIP interactions:11 interactions with chain H- Hydrophobic interactions: H:F.52, H:Y.54, H:K.166
- Hydrogen bonds: H:S.139, H:E.247, H:Q.317
- Water bridges: H:E.221
- Salt bridges: H:K.164, H:K.166, H:H.297
- pi-Stacking: H:H.297
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mitra, B. et al., Mechanism of the reaction catalyzed by mandelate racemase: importance of electrophilic catalysis by glutamic acid 317. Biochemistry (1995)
- Release Date
- 1996-10-14
- Peptides
- MANDELATE RACEMASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APG: ATROLACTIC ACID (2-PHENYL-LACTIC ACID)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mitra, B. et al., Mechanism of the reaction catalyzed by mandelate racemase: importance of electrophilic catalysis by glutamic acid 317. Biochemistry (1995)
- Release Date
- 1996-10-14
- Peptides
- MANDELATE RACEMASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A