SMTL ID : 1dvr.1

STRUCTURE OF A MUTANT ADENYLATE KINASE LIGATED WITH AN ATP-ANALOGUE SHOWING DOMAIN CLOSURE OVER ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

2 x ATF: PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ATF.1: 20 residues within 4Å: Chain A: P.12, P.13, G.14, A.15, G.16, K.17, G.18, T.19, R.128, R.132, S.141, Y.142, H.143, F.146, A.202, Q.204, P.205, P.206 Chain B: K.55, Q.59 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:P.12, A:G.14, A:A.15, A:G.16, A:K.17, A:K.17, A:G.18, A:T.19, A:R.128, A:R.132, A:R.132, A:S.141, A:Y.142, A:Q.204, B:K.55, B:Q.59, B:Q.59 Water bridges: A:T.19 Salt bridges: A:R.132 pi-Cation interactions: A:R.128 ATF.2: 21 residues within 4Å: Chain A: K.55, Q.59 Chain B: P.12, P.13, G.14, A.15, G.16, K.17, G.18, T.19, R.128, R.132, S.141, Y.142, H.143, F.146, A.202, Q.204, P.205, P.206, V.209 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:P.12, B:G.14, B:A.15, B:G.16, B:K.17, B:K.17, B:G.18, B:G.18, B:T.19, B:R.132, B:R.132, B:S.141, B:Y.142, B:Q.204, A:K.55, A:Q.59 Salt bridges: B:R.132 pi-Cation interactions: B:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlauderer, G.J. et al., Structure of a mutant adenylate kinase ligated with an ATP-analogue showing domain closure over ATP. J.Mol.Biol. (1996)

Release Date

1996-04-03

Peptides

ADENYLATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADENYLATE KINASE