SMTL ID : 1dvy.1

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH N-(M-TRIFLUOROMETHYLPHENYL) PHENOXAZINE-4,6-DICARBOXYLIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

2 x BPD: N-(M-TRIFLUOROMETHYLPHENYL) PHENOXAZINE-4,6-DICARBOXYLIC ACID(Non-covalent)

BPD.1: 14 residues within 4Å: Chain A: M.13, K.15, L.17, E.54, T.106, A.108, A.109, L.110 Chain C: K.15, L.17, T.106, A.108, V.121 Ligands: BPD.2 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:L.17, A:T.106, C:K.15, C:L.17, C:T.106, C:A.108, C:V.121 Hydrogen bonds: A:E.54 Salt bridges: A:K.15, A:K.15 pi-Cation interactions: C:K.15 BPD.2: 14 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, V.121 Chain C: M.13, K.15, L.17, E.54, T.106, A.108, A.109, L.110 Ligands: BPD.1 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.15, A:L.17, A:T.106, A:A.108, A:V.121, C:L.17, C:T.106 pi-Cation interactions: A:K.15 Hydrogen bonds: C:E.54 Salt bridges: C:K.15, C:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klabunde, T. et al., Rational design of potent human transthyretin amyloid disease inhibitors. Nat.Struct.Biol. (2000)

Release Date

2001-01-23

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

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